Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.39■□□□□ 0.37
COL4A4P53420 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
COL4A4P53420 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A4P53420 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A4P53420 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A4P53420 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A4P53420 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.38■□□□□ 0.37
COL4A4P53420 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A4P53420 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
COL4A4P53420 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A4P53420 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.38■□□□□ 0.37
COL4A4P53420 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
COL4A4P53420 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A4P53420 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A4P53420 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A4P53420 APOC3-202ENST00000375345 604 ntTSL 5 BASIC17.38■□□□□ 0.37
COL4A4P53420 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
COL4A4P53420 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A4P53420 NME6-203ENST00000415644 849 ntTSL 2 BASIC17.38■□□□□ 0.37
COL4A4P53420 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A4P53420 CTBP2P5-201ENST00000454986 1264 ntBASIC17.38■□□□□ 0.37
COL4A4P53420 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC17.38■□□□□ 0.37
COL4A4P53420 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
COL4A4P53420 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC17.38■□□□□ 0.37
COL4A4P53420 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC17.38■□□□□ 0.37
COL4A4P53420 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC17.38■□□□□ 0.37
COL4A4P53420 AC243960.2-201ENST00000600996 747 ntBASIC17.38■□□□□ 0.37
COL4A4P53420 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.38■□□□□ 0.37
COL4A4P53420 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A4P53420 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A4P53420 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A4P53420 AC020907.1-201ENST00000616460 1350 ntBASIC17.38■□□□□ 0.37
COL4A4P53420 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A4P53420 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
COL4A4P53420 AC006538.1-201ENST00000567905 1585 ntBASIC17.38■□□□□ 0.37
COL4A4P53420 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A4P53420 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
COL4A4P53420 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL4A4P53420 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A4P53420 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
COL4A4P53420 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A4P53420 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A4P53420 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A4P53420 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.37■□□□□ 0.37
COL4A4P53420 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A4P53420 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.37■□□□□ 0.37
COL4A4P53420 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.37■□□□□ 0.37
COL4A4P53420 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.37■□□□□ 0.37
COL4A4P53420 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC17.37■□□□□ 0.37
COL4A4P53420 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
COL4A4P53420 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A4P53420 CD74-212ENST00000524315 584 ntTSL 5 BASIC17.37■□□□□ 0.37
COL4A4P53420 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC17.37■□□□□ 0.37
COL4A4P53420 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.37■□□□□ 0.37
COL4A4P53420 PAM16-204ENST00000571941 674 ntTSL 3 BASIC17.37■□□□□ 0.37
COL4A4P53420 AC024267.1-201ENST00000582320 895 ntBASIC17.37■□□□□ 0.37
COL4A4P53420 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
COL4A4P53420 PFAS-212ENST00000625942 396 ntTSL 5 BASIC17.37■□□□□ 0.37
COL4A4P53420 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A4P53420 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A4P53420 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.37■□□□□ 0.37
COL4A4P53420 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
COL4A4P53420 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A4P53420 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A4P53420 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A4P53420 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A4P53420 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A4P53420 HAUS4P1-201ENST00000406739 1145 ntBASIC17.36■□□□□ 0.37
COL4A4P53420 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC17.36■□□□□ 0.37
COL4A4P53420 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC17.36■□□□□ 0.37
COL4A4P53420 AC098859.1-201ENST00000502915 1238 ntBASIC17.36■□□□□ 0.37
COL4A4P53420 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC17.36■□□□□ 0.37
COL4A4P53420 PIGL-212ENST00000581006 554 ntTSL 4 BASIC17.36■□□□□ 0.37
COL4A4P53420 TMEM261P1-201ENST00000604899 340 ntBASIC17.36■□□□□ 0.37
COL4A4P53420 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC17.36■□□□□ 0.37
COL4A4P53420 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC17.36■□□□□ 0.37
COL4A4P53420 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A4P53420 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.36■□□□□ 0.37
COL4A4P53420 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A4P53420 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A4P53420 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A4P53420 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A4P53420 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A4P53420 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
COL4A4P53420 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A4P53420 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A4P53420 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
COL4A4P53420 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A4P53420 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A4P53420 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
COL4A4P53420 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC17.36■□□□□ 0.37
COL4A4P53420 AC093724.1-201ENST00000448659 1027 ntBASIC17.36■□□□□ 0.37
COL4A4P53420 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC17.36■□□□□ 0.37
COL4A4P53420 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC17.36■□□□□ 0.37
COL4A4P53420 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC17.36■□□□□ 0.37
COL4A4P53420 RIT1-205ENST00000539040 919 ntTSL 2 BASIC17.36■□□□□ 0.37
COL4A4P53420 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC17.36■□□□□ 0.37
COL4A4P53420 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.36■□□□□ 0.37
COL4A4P53420 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A4P53420 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms