Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.28■□□□□ 0.2
CXCL12P48061 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CXCL12P48061 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.28■□□□□ 0.2
CXCL12P48061 MIR6869-201ENST00000619434 62 ntBASIC16.28■□□□□ 0.2
CXCL12P48061 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.28■□□□□ 0.2
CXCL12P48061 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
CXCL12P48061 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CXCL12P48061 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.28■□□□□ 0.2
CXCL12P48061 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CXCL12P48061 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
CXCL12P48061 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CXCL12P48061 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
CXCL12P48061 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
CXCL12P48061 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.27■□□□□ 0.2
CXCL12P48061 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.27■□□□□ 0.2
CXCL12P48061 AC092053.1-201ENST00000605787 1936 ntBASIC16.27■□□□□ 0.2
CXCL12P48061 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
CXCL12P48061 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CXCL12P48061 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.27■□□□□ 0.2
CXCL12P48061 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CXCL12P48061 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CXCL12P48061 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CXCL12P48061 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.27■□□□□ 0.2
CXCL12P48061 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.27■□□□□ 0.2
CXCL12P48061 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CXCL12P48061 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CXCL12P48061 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CXCL12P48061 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CXCL12P48061 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
CXCL12P48061 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CXCL12P48061 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.27■□□□□ 0.2
CXCL12P48061 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.27■□□□□ 0.2
CXCL12P48061 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC16.27■□□□□ 0.2
CXCL12P48061 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC16.27■□□□□ 0.2
CXCL12P48061 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC16.27■□□□□ 0.2
CXCL12P48061 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC16.27■□□□□ 0.2
CXCL12P48061 WNT11-204ENST00000621122 789 ntTSL 5 BASIC16.27■□□□□ 0.2
CXCL12P48061 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC16.27■□□□□ 0.2
CXCL12P48061 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CXCL12P48061 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.27■□□□□ 0.2
CXCL12P48061 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CXCL12P48061 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CXCL12P48061 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CXCL12P48061 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
CXCL12P48061 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
CXCL12P48061 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
CXCL12P48061 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CXCL12P48061 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CXCL12P48061 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CXCL12P48061 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CXCL12P48061 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
CXCL12P48061 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CXCL12P48061 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CXCL12P48061 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CXCL12P48061 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CXCL12P48061 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CXCL12P48061 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.26■□□□□ 0.19
CXCL12P48061 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CXCL12P48061 AL512652.2-201ENST00000625156 1716 ntBASIC16.26■□□□□ 0.19
CXCL12P48061 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
CXCL12P48061 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CXCL12P48061 APOC3-202ENST00000375345 604 ntTSL 5 BASIC16.26■□□□□ 0.19
CXCL12P48061 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CXCL12P48061 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC16.26■□□□□ 0.19
CXCL12P48061 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.26■□□□□ 0.19
CXCL12P48061 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.26■□□□□ 0.19
CXCL12P48061 RN7SL399P-201ENST00000471648 279 ntBASIC16.26■□□□□ 0.19
CXCL12P48061 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CXCL12P48061 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC16.26■□□□□ 0.19
CXCL12P48061 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.26■□□□□ 0.19
CXCL12P48061 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
CXCL12P48061 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.26■□□□□ 0.19
CXCL12P48061 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.26■□□□□ 0.19
CXCL12P48061 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CXCL12P48061 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CXCL12P48061 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CXCL12P48061 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.26■□□□□ 0.19
CXCL12P48061 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CXCL12P48061 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CXCL12P48061 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CXCL12P48061 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
CXCL12P48061 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CXCL12P48061 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CXCL12P48061 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
CXCL12P48061 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.26■□□□□ 0.19
CXCL12P48061 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CXCL12P48061 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CXCL12P48061 PDIA3P1-201ENST00000471856 1510 ntBASIC16.25■□□□□ 0.19
CXCL12P48061 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
CXCL12P48061 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CXCL12P48061 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CXCL12P48061 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms