Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RFC4P35249 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFC4P35249 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFC4P35249 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFC4P35249 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC20.54■□□□□ 0.88
RFC4P35249 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFC4P35249 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC20.54■□□□□ 0.88
RFC4P35249 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC20.54■□□□□ 0.88
RFC4P35249 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RFC4P35249 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFC4P35249 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFC4P35249 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFC4P35249 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
RFC4P35249 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFC4P35249 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC20.54■□□□□ 0.88
RFC4P35249 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RFC4P35249 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.54■□□□□ 0.88
RFC4P35249 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFC4P35249 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFC4P35249 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFC4P35249 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFC4P35249 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFC4P35249 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFC4P35249 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
RFC4P35249 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
RFC4P35249 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
RFC4P35249 PTK7-212ENST00000476760 902 ntTSL 2 BASIC20.54■□□□□ 0.88
RFC4P35249 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC20.54■□□□□ 0.88
RFC4P35249 USP32P1-208ENST00000506594 1164 ntBASIC20.54■□□□□ 0.88
RFC4P35249 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
RFC4P35249 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC20.54■□□□□ 0.88
RFC4P35249 RPS24-214ENST00000613865 538 ntTSL 5 BASIC20.54■□□□□ 0.88
RFC4P35249 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
RFC4P35249 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFC4P35249 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFC4P35249 AC018665.1-201ENST00000622927 1362 ntBASIC20.54■□□□□ 0.88
RFC4P35249 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RFC4P35249 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFC4P35249 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
RFC4P35249 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFC4P35249 GPAA1P2-202ENST00000606848 1787 ntBASIC20.54■□□□□ 0.88
RFC4P35249 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFC4P35249 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RFC4P35249 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC20.53■□□□□ 0.88
RFC4P35249 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
RFC4P35249 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RFC4P35249 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC20.53■□□□□ 0.88
RFC4P35249 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFC4P35249 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
RFC4P35249 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFC4P35249 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RFC4P35249 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RFC4P35249 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFC4P35249 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC20.53■□□□□ 0.88
RFC4P35249 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
RFC4P35249 STX1A-203ENST00000395155 783 ntTSL 2 BASIC20.53■□□□□ 0.88
RFC4P35249 NME6-203ENST00000415644 849 ntTSL 2 BASIC20.53■□□□□ 0.88
RFC4P35249 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC20.53■□□□□ 0.88
RFC4P35249 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
RFC4P35249 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC20.53■□□□□ 0.88
RFC4P35249 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC20.53■□□□□ 0.88
RFC4P35249 GPR182-203ENST00000622922 591 ntBASIC20.53■□□□□ 0.88
RFC4P35249 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC20.53■□□□□ 0.88
RFC4P35249 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFC4P35249 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RFC4P35249 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
RFC4P35249 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFC4P35249 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFC4P35249 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFC4P35249 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFC4P35249 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC20.53■□□□□ 0.88
RFC4P35249 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RFC4P35249 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFC4P35249 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFC4P35249 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
RFC4P35249 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFC4P35249 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RFC4P35249 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RFC4P35249 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
RFC4P35249 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFC4P35249 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFC4P35249 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
RFC4P35249 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
RFC4P35249 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RFC4P35249 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC20.52■□□□□ 0.88
RFC4P35249 FO393414.2-201ENST00000405153 598 ntBASIC20.52■□□□□ 0.88
RFC4P35249 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC20.52■□□□□ 0.88
RFC4P35249 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC20.52■□□□□ 0.88
RFC4P35249 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC20.52■□□□□ 0.88
RFC4P35249 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC20.52■□□□□ 0.88
RFC4P35249 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC20.52■□□□□ 0.88
RFC4P35249 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
RFC4P35249 AC233724.13-201ENST00000598383 410 ntBASIC20.52■□□□□ 0.88
RFC4P35249 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RFC4P35249 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFC4P35249 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
RFC4P35249 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
RFC4P35249 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.87
RFC4P35249 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
RFC4P35249 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC20.52■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms