Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMARCA1P28370 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMARCA1P28370 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMARCA1P28370 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMARCA1P28370 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMARCA1P28370 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMARCA1P28370 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SMARCA1P28370 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SMARCA1P28370 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SMARCA1P28370 HNRNPFP1-201ENST00000391730 1133 ntBASIC18.85■□□□□ 0.61
SMARCA1P28370 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
SMARCA1P28370 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.85■□□□□ 0.61
SMARCA1P28370 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC18.85■□□□□ 0.61
SMARCA1P28370 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC18.85■□□□□ 0.61
SMARCA1P28370 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC18.85■□□□□ 0.61
SMARCA1P28370 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC18.85■□□□□ 0.61
SMARCA1P28370 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC18.85■□□□□ 0.61
SMARCA1P28370 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMARCA1P28370 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SMARCA1P28370 AC093028.1-201ENST00000622998 982 ntBASIC18.85■□□□□ 0.61
SMARCA1P28370 Z92544.3-201ENST00000624747 417 ntBASIC18.85■□□□□ 0.61
SMARCA1P28370 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMARCA1P28370 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SMARCA1P28370 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC18.85■□□□□ 0.61
SMARCA1P28370 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SMARCA1P28370 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SMARCA1P28370 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SMARCA1P28370 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.85■□□□□ 0.61
SMARCA1P28370 MTHFR-217ENST00000641820 1569 ntBASIC18.85■□□□□ 0.61
SMARCA1P28370 AC005052.1-201ENST00000625181 2492 ntBASIC18.84■□□□□ 0.61
SMARCA1P28370 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCA1P28370 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC18.84■□□□□ 0.61
SMARCA1P28370 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCA1P28370 AL035456.1-201ENST00000456064 1369 ntBASIC18.84■□□□□ 0.61
SMARCA1P28370 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCA1P28370 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
SMARCA1P28370 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCA1P28370 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCA1P28370 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCA1P28370 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
SMARCA1P28370 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC18.84■□□□□ 0.61
SMARCA1P28370 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC18.84■□□□□ 0.61
SMARCA1P28370 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC18.84■□□□□ 0.61
SMARCA1P28370 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC18.84■□□□□ 0.61
SMARCA1P28370 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC18.84■□□□□ 0.61
SMARCA1P28370 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC18.84■□□□□ 0.61
SMARCA1P28370 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC18.84■□□□□ 0.61
SMARCA1P28370 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.84■□□□□ 0.61
SMARCA1P28370 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCA1P28370 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
SMARCA1P28370 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCA1P28370 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC18.84■□□□□ 0.61
SMARCA1P28370 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.84■□□□□ 0.61
SMARCA1P28370 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCA1P28370 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
SMARCA1P28370 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCA1P28370 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCA1P28370 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SMARCA1P28370 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMARCA1P28370 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SMARCA1P28370 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC18.83■□□□□ 0.61
SMARCA1P28370 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SMARCA1P28370 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SMARCA1P28370 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.83■□□□□ 0.61
SMARCA1P28370 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SMARCA1P28370 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.83■□□□□ 0.61
SMARCA1P28370 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMARCA1P28370 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMARCA1P28370 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMARCA1P28370 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
SMARCA1P28370 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMARCA1P28370 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
SMARCA1P28370 AL353705.2-201ENST00000428243 662 ntBASIC18.83■□□□□ 0.6
SMARCA1P28370 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC18.83■□□□□ 0.6
SMARCA1P28370 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC18.83■□□□□ 0.6
SMARCA1P28370 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC18.83■□□□□ 0.6
SMARCA1P28370 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC18.83■□□□□ 0.6
SMARCA1P28370 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
SMARCA1P28370 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC18.83■□□□□ 0.6
SMARCA1P28370 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMARCA1P28370 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMARCA1P28370 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMARCA1P28370 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMARCA1P28370 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMARCA1P28370 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMARCA1P28370 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18.83■□□□□ 0.6
SMARCA1P28370 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.83■□□□□ 0.6
SMARCA1P28370 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.83■□□□□ 0.6
SMARCA1P28370 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC18.83■□□□□ 0.6
SMARCA1P28370 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
SMARCA1P28370 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC18.83■□□□□ 0.6
SMARCA1P28370 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SMARCA1P28370 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SMARCA1P28370 TUBB3P1-201ENST00000405796 1332 ntBASIC18.82■□□□□ 0.6
SMARCA1P28370 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC18.82■□□□□ 0.6
SMARCA1P28370 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SMARCA1P28370 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SMARCA1P28370 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMARCA1P28370 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
SMARCA1P28370 PNMT-202ENST00000394246 821 ntTSL 2 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms