Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
COL8A1P27658 ABALON-201ENST00000629058 1903 ntBASIC14.39□□□□□ -0.11
COL8A1P27658 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC14.39□□□□□ -0.11
COL8A1P27658 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL8A1P27658 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
COL8A1P27658 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL8A1P27658 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC14.38□□□□□ -0.11
COL8A1P27658 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
COL8A1P27658 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL8A1P27658 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL8A1P27658 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL8A1P27658 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL8A1P27658 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL8A1P27658 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
COL8A1P27658 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL8A1P27658 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL8A1P27658 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
COL8A1P27658 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
COL8A1P27658 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL8A1P27658 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL8A1P27658 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
COL8A1P27658 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL8A1P27658 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL8A1P27658 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL8A1P27658 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.38□□□□□ -0.11
COL8A1P27658 BOLA2P3-201ENST00000404566 256 ntBASIC14.38□□□□□ -0.11
COL8A1P27658 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC14.38□□□□□ -0.11
COL8A1P27658 PRYP6-201ENST00000514804 343 ntBASIC14.38□□□□□ -0.11
COL8A1P27658 ZNF890P-202ENST00000530367 1156 ntBASIC14.38□□□□□ -0.11
COL8A1P27658 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.38□□□□□ -0.11
COL8A1P27658 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.38□□□□□ -0.11
COL8A1P27658 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.38□□□□□ -0.11
COL8A1P27658 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.38□□□□□ -0.11
COL8A1P27658 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC14.38□□□□□ -0.11
COL8A1P27658 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.38□□□□□ -0.11
COL8A1P27658 AL139099.5-201ENST00000635274 300 ntBASIC14.38□□□□□ -0.11
COL8A1P27658 AL033527.5-201ENST00000641382 801 ntBASIC14.38□□□□□ -0.11
COL8A1P27658 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL8A1P27658 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC14.38□□□□□ -0.11
COL8A1P27658 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC14.38□□□□□ -0.11
COL8A1P27658 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
COL8A1P27658 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL8A1P27658 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.38□□□□□ -0.11
COL8A1P27658 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC14.38□□□□□ -0.11
COL8A1P27658 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC14.38□□□□□ -0.11
COL8A1P27658 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL8A1P27658 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC14.38□□□□□ -0.11
COL8A1P27658 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL8A1P27658 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC14.38□□□□□ -0.11
COL8A1P27658 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
COL8A1P27658 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
COL8A1P27658 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL8A1P27658 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC14.38□□□□□ -0.11
COL8A1P27658 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL8A1P27658 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL8A1P27658 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC14.37□□□□□ -0.11
COL8A1P27658 STK4-201ENST00000372801 2038 ntTSL 2 BASIC14.37□□□□□ -0.11
COL8A1P27658 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL8A1P27658 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL8A1P27658 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC14.37□□□□□ -0.11
COL8A1P27658 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL8A1P27658 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL8A1P27658 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.37□□□□□ -0.11
COL8A1P27658 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC14.37□□□□□ -0.11
COL8A1P27658 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL8A1P27658 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL8A1P27658 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC14.37□□□□□ -0.11
COL8A1P27658 MADD-208ENST00000405573 1823 ntTSL 5 BASIC14.37□□□□□ -0.11
COL8A1P27658 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL8A1P27658 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL8A1P27658 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL8A1P27658 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL8A1P27658 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC14.37□□□□□ -0.11
COL8A1P27658 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC14.37□□□□□ -0.11
COL8A1P27658 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.37□□□□□ -0.11
COL8A1P27658 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.37□□□□□ -0.11
COL8A1P27658 AL355994.2-201ENST00000447882 704 ntBASIC14.37□□□□□ -0.11
COL8A1P27658 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL8A1P27658 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.37□□□□□ -0.11
COL8A1P27658 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL8A1P27658 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
COL8A1P27658 MAX-210ENST00000555419 765 ntTSL 5 BASIC14.37□□□□□ -0.11
COL8A1P27658 BTNL10-201ENST00000595971 695 ntBASIC14.37□□□□□ -0.11
COL8A1P27658 AC004461.2-201ENST00000629517 803 ntBASIC14.37□□□□□ -0.11
COL8A1P27658 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC14.37□□□□□ -0.11
COL8A1P27658 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC14.37□□□□□ -0.11
COL8A1P27658 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL8A1P27658 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL8A1P27658 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
COL8A1P27658 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL8A1P27658 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL8A1P27658 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
COL8A1P27658 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
COL8A1P27658 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC14.37□□□□□ -0.11
COL8A1P27658 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC14.36□□□□□ -0.11
COL8A1P27658 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC14.36□□□□□ -0.11
COL8A1P27658 PDIA3P1-201ENST00000471856 1510 ntBASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms