Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.38■□□□□ 0.37
BDNFP23560 SPDYE7P-202ENST00000420373 878 ntBASIC17.38■□□□□ 0.37
BDNFP23560 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.38■□□□□ 0.37
BDNFP23560 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
BDNFP23560 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
BDNFP23560 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.38■□□□□ 0.37
BDNFP23560 AC067863.1-201ENST00000494933 530 ntBASIC17.38■□□□□ 0.37
BDNFP23560 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.38■□□□□ 0.37
BDNFP23560 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
BDNFP23560 DUX4L27-201ENST00000554796 1261 ntBASIC17.38■□□□□ 0.37
BDNFP23560 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.38■□□□□ 0.37
BDNFP23560 RARRES2P9-201ENST00000565168 469 ntBASIC17.38■□□□□ 0.37
BDNFP23560 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.38■□□□□ 0.37
BDNFP23560 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
BDNFP23560 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
BDNFP23560 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BDNFP23560 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.38■□□□□ 0.37
BDNFP23560 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
BDNFP23560 GGT3P-204ENST00000453783 1664 ntBASIC17.38■□□□□ 0.37
BDNFP23560 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.38■□□□□ 0.37
BDNFP23560 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BDNFP23560 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.38■□□□□ 0.37
BDNFP23560 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.38■□□□□ 0.37
BDNFP23560 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BDNFP23560 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.38■□□□□ 0.37
BDNFP23560 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
BDNFP23560 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.38■□□□□ 0.37
BDNFP23560 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.38■□□□□ 0.37
BDNFP23560 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BDNFP23560 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.37■□□□□ 0.37
BDNFP23560 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.37■□□□□ 0.37
BDNFP23560 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
BDNFP23560 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BDNFP23560 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BDNFP23560 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.37■□□□□ 0.37
BDNFP23560 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
BDNFP23560 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BDNFP23560 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BDNFP23560 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.37■□□□□ 0.37
BDNFP23560 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
BDNFP23560 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BDNFP23560 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
BDNFP23560 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.37■□□□□ 0.37
BDNFP23560 AC093724.1-201ENST00000448659 1027 ntBASIC17.37■□□□□ 0.37
BDNFP23560 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.37■□□□□ 0.37
BDNFP23560 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.37■□□□□ 0.37
BDNFP23560 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.37■□□□□ 0.37
BDNFP23560 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.37■□□□□ 0.37
BDNFP23560 AC051619.7-201ENST00000568314 623 ntBASIC17.37■□□□□ 0.37
BDNFP23560 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.37■□□□□ 0.37
BDNFP23560 MIR4453-201ENST00000584019 89 ntBASIC17.37■□□□□ 0.37
BDNFP23560 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.37■□□□□ 0.37
BDNFP23560 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.37■□□□□ 0.37
BDNFP23560 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.37■□□□□ 0.37
BDNFP23560 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
BDNFP23560 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
BDNFP23560 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.37■□□□□ 0.37
BDNFP23560 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BDNFP23560 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BDNFP23560 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BDNFP23560 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BDNFP23560 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BDNFP23560 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BDNFP23560 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BDNFP23560 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BDNFP23560 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BDNFP23560 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
BDNFP23560 AGGF1P2-201ENST00000426656 2106 ntBASIC17.36■□□□□ 0.37
BDNFP23560 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
BDNFP23560 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.36■□□□□ 0.37
BDNFP23560 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.36■□□□□ 0.37
BDNFP23560 MIR770-201ENST00000390219 98 ntBASIC17.36■□□□□ 0.37
BDNFP23560 KLF2P3-201ENST00000451977 1087 ntBASIC17.36■□□□□ 0.37
BDNFP23560 AC098859.1-201ENST00000502915 1238 ntBASIC17.36■□□□□ 0.37
BDNFP23560 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.36■□□□□ 0.37
BDNFP23560 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
BDNFP23560 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.36■□□□□ 0.37
BDNFP23560 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.36■□□□□ 0.37
BDNFP23560 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BDNFP23560 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
BDNFP23560 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
BDNFP23560 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
BDNFP23560 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
BDNFP23560 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
BDNFP23560 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BDNFP23560 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
BDNFP23560 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
BDNFP23560 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.35■□□□□ 0.37
BDNFP23560 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
BDNFP23560 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
BDNFP23560 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.35■□□□□ 0.37
BDNFP23560 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
BDNFP23560 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
BDNFP23560 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
BDNFP23560 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
BDNFP23560 HLA-H-201ENST00000383620 1096 ntBASIC17.35■□□□□ 0.37
BDNFP23560 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.35■□□□□ 0.37
BDNFP23560 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
BDNFP23560 AC125807.1-201ENST00000483097 614 ntBASIC17.35■□□□□ 0.37
BDNFP23560 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms