Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.85■□□□□ 0.29
COL9A1P20849 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL9A1P20849 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.85■□□□□ 0.29
COL9A1P20849 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL9A1P20849 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
COL9A1P20849 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
COL9A1P20849 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC16.84■□□□□ 0.29
COL9A1P20849 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL9A1P20849 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL9A1P20849 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL9A1P20849 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL9A1P20849 AC142381.1-201ENST00000426099 345 ntBASIC16.84■□□□□ 0.29
COL9A1P20849 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL9A1P20849 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC16.84■□□□□ 0.29
COL9A1P20849 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC16.84■□□□□ 0.29
COL9A1P20849 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL9A1P20849 PPOX-204ENST00000462866 473 ntTSL 5 BASIC16.84■□□□□ 0.29
COL9A1P20849 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC16.84■□□□□ 0.29
COL9A1P20849 COA4-204ENST00000541455 1038 ntTSL 5 BASIC16.84■□□□□ 0.29
COL9A1P20849 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.84■□□□□ 0.29
COL9A1P20849 AC023310.3-201ENST00000557027 670 ntBASIC16.84■□□□□ 0.29
COL9A1P20849 AC100756.1-201ENST00000562736 682 ntBASIC16.84■□□□□ 0.29
COL9A1P20849 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.84■□□□□ 0.29
COL9A1P20849 AC138749.3-201ENST00000567691 622 ntBASIC16.84■□□□□ 0.29
COL9A1P20849 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.84■□□□□ 0.29
COL9A1P20849 AC116165.1-201ENST00000611806 668 ntBASIC16.84■□□□□ 0.29
COL9A1P20849 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC16.84■□□□□ 0.29
COL9A1P20849 TMEM14EP-202ENST00000639378 1296 ntBASIC16.84■□□□□ 0.29
COL9A1P20849 AL021920.2-201ENST00000624828 1351 ntBASIC16.84■□□□□ 0.29
COL9A1P20849 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC16.84■□□□□ 0.29
COL9A1P20849 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL9A1P20849 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL9A1P20849 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL9A1P20849 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL9A1P20849 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL9A1P20849 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.84■□□□□ 0.29
COL9A1P20849 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.84■□□□□ 0.29
COL9A1P20849 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL9A1P20849 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.84■□□□□ 0.29
COL9A1P20849 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL9A1P20849 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
COL9A1P20849 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
COL9A1P20849 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
COL9A1P20849 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
COL9A1P20849 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
COL9A1P20849 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
COL9A1P20849 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.83■□□□□ 0.29
COL9A1P20849 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL9A1P20849 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL9A1P20849 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL9A1P20849 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.83■□□□□ 0.28
COL9A1P20849 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL9A1P20849 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
COL9A1P20849 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL9A1P20849 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.83■□□□□ 0.28
COL9A1P20849 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL9A1P20849 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL9A1P20849 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL9A1P20849 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
COL9A1P20849 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL9A1P20849 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL9A1P20849 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
COL9A1P20849 AL353705.2-201ENST00000428243 662 ntBASIC16.83■□□□□ 0.28
COL9A1P20849 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL9A1P20849 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL9A1P20849 FTLP1-201ENST00000449155 526 ntBASIC16.83■□□□□ 0.28
COL9A1P20849 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.83■□□□□ 0.28
COL9A1P20849 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL9A1P20849 RN7SL618P-201ENST00000477850 296 ntBASIC16.83■□□□□ 0.28
COL9A1P20849 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
COL9A1P20849 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC16.83■□□□□ 0.28
COL9A1P20849 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC16.83■□□□□ 0.28
COL9A1P20849 AC044860.1-202ENST00000559481 777 ntBASIC16.83■□□□□ 0.28
COL9A1P20849 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.83■□□□□ 0.28
COL9A1P20849 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL9A1P20849 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC16.83■□□□□ 0.28
COL9A1P20849 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL9A1P20849 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC16.83■□□□□ 0.28
COL9A1P20849 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.83■□□□□ 0.28
COL9A1P20849 SRD5A3P1-201ENST00000603021 949 ntBASIC16.83■□□□□ 0.28
COL9A1P20849 RN7SL828P-201ENST00000607615 303 ntBASIC16.83■□□□□ 0.28
COL9A1P20849 AL022328.1-201ENST00000610050 478 ntBASIC16.83■□□□□ 0.28
COL9A1P20849 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
COL9A1P20849 MIR8072-201ENST00000614241 80 ntBASIC16.83■□□□□ 0.28
COL9A1P20849 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL9A1P20849 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL9A1P20849 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL9A1P20849 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL9A1P20849 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.82■□□□□ 0.28
COL9A1P20849 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL9A1P20849 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
COL9A1P20849 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.82■□□□□ 0.28
COL9A1P20849 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL9A1P20849 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms