Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGA1P17096 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC16.99■□□□□ 0.31
HMGA1P17096 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.99■□□□□ 0.31
HMGA1P17096 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HMGA1P17096 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.99■□□□□ 0.31
HMGA1P17096 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.99■□□□□ 0.31
HMGA1P17096 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.99■□□□□ 0.31
HMGA1P17096 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGA1P17096 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.99■□□□□ 0.31
HMGA1P17096 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGA1P17096 MIR4321-201ENST00000592276 80 ntBASIC16.99■□□□□ 0.31
HMGA1P17096 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGA1P17096 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
HMGA1P17096 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.99■□□□□ 0.31
HMGA1P17096 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
HMGA1P17096 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
HMGA1P17096 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
HMGA1P17096 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGA1P17096 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
HMGA1P17096 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGA1P17096 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HMGA1P17096 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGA1P17096 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGA1P17096 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGA1P17096 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGA1P17096 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGA1P17096 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.98■□□□□ 0.31
HMGA1P17096 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGA1P17096 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGA1P17096 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.98■□□□□ 0.31
HMGA1P17096 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
HMGA1P17096 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.98■□□□□ 0.31
HMGA1P17096 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGA1P17096 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGA1P17096 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGA1P17096 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGA1P17096 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGA1P17096 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGA1P17096 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.98■□□□□ 0.31
HMGA1P17096 AL139010.1-201ENST00000454878 894 ntBASIC16.98■□□□□ 0.31
HMGA1P17096 RN7SL618P-201ENST00000477850 296 ntBASIC16.98■□□□□ 0.31
HMGA1P17096 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC16.98■□□□□ 0.31
HMGA1P17096 AP005018.1-201ENST00000525475 301 ntBASIC16.98■□□□□ 0.31
HMGA1P17096 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGA1P17096 CFL1-212ENST00000531413 636 ntTSL 3 BASIC16.98■□□□□ 0.31
HMGA1P17096 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGA1P17096 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.98■□□□□ 0.31
HMGA1P17096 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.98■□□□□ 0.31
HMGA1P17096 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
HMGA1P17096 AL365330.1-201ENST00000607459 531 ntBASIC16.98■□□□□ 0.31
HMGA1P17096 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGA1P17096 AL662799.1-202ENST00000614205 422 ntBASIC16.98■□□□□ 0.31
HMGA1P17096 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGA1P17096 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
HMGA1P17096 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGA1P17096 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.98■□□□□ 0.31
HMGA1P17096 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.98■□□□□ 0.31
HMGA1P17096 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGA1P17096 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGA1P17096 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGA1P17096 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
HMGA1P17096 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.98■□□□□ 0.31
HMGA1P17096 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.98■□□□□ 0.31
HMGA1P17096 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGA1P17096 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
HMGA1P17096 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
HMGA1P17096 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGA1P17096 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.97■□□□□ 0.31
HMGA1P17096 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGA1P17096 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGA1P17096 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGA1P17096 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGA1P17096 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGA1P17096 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGA1P17096 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGA1P17096 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGA1P17096 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGA1P17096 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGA1P17096 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGA1P17096 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
HMGA1P17096 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
HMGA1P17096 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC16.97■□□□□ 0.31
HMGA1P17096 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.97■□□□□ 0.31
HMGA1P17096 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.97■□□□□ 0.31
HMGA1P17096 AC005225.4-201ENST00000557330 545 ntBASIC16.97■□□□□ 0.31
HMGA1P17096 AC044860.1-202ENST00000559481 777 ntBASIC16.97■□□□□ 0.31
HMGA1P17096 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.97■□□□□ 0.31
HMGA1P17096 AC239800.4-201ENST00000603712 296 ntBASIC16.97■□□□□ 0.31
HMGA1P17096 AC004233.3-201ENST00000607794 1269 ntBASIC16.97■□□□□ 0.31
HMGA1P17096 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.97■□□□□ 0.31
HMGA1P17096 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.97■□□□□ 0.31
HMGA1P17096 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.97■□□□□ 0.31
HMGA1P17096 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.97■□□□□ 0.31
HMGA1P17096 AL033527.5-202ENST00000641632 1098 ntBASIC16.97■□□□□ 0.31
HMGA1P17096 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGA1P17096 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGA1P17096 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGA1P17096 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGA1P17096 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGA1P17096 BTBD7P1-201ENST00000447253 1453 ntBASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms