Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 AL671710.1-201ENST00000610245 2349 ntBASIC16.67■□□□□ 0.26
VIMP08670 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
VIMP08670 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.67■□□□□ 0.26
VIMP08670 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC16.67■□□□□ 0.26
VIMP08670 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 FAM8A6P-201ENST00000407496 1135 ntBASIC16.67■□□□□ 0.26
VIMP08670 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC16.67■□□□□ 0.26
VIMP08670 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC16.67■□□□□ 0.26
VIMP08670 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC16.67■□□□□ 0.26
VIMP08670 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.67■□□□□ 0.26
VIMP08670 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC16.67■□□□□ 0.26
VIMP08670 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.67■□□□□ 0.26
VIMP08670 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
VIMP08670 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
VIMP08670 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 AP003680.1-201ENST00000598970 3660 ntBASIC16.67■□□□□ 0.26
VIMP08670 REXO1L8P-201ENST00000604378 1897 ntBASIC16.67■□□□□ 0.26
VIMP08670 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
VIMP08670 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
VIMP08670 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
VIMP08670 AL353593.2-201ENST00000602529 1483 ntBASIC16.67■□□□□ 0.26
VIMP08670 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
VIMP08670 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VIMP08670 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VIMP08670 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
VIMP08670 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
VIMP08670 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VIMP08670 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VIMP08670 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
VIMP08670 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VIMP08670 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.66■□□□□ 0.26
VIMP08670 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VIMP08670 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
VIMP08670 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
VIMP08670 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
VIMP08670 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
VIMP08670 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VIMP08670 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VIMP08670 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.66■□□□□ 0.26
VIMP08670 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC16.66■□□□□ 0.26
VIMP08670 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16.66■□□□□ 0.26
VIMP08670 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VIMP08670 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VIMP08670 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.66■□□□□ 0.26
VIMP08670 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.66■□□□□ 0.26
VIMP08670 NAPSB-206ENST00000562112 1266 ntBASIC16.66■□□□□ 0.26
VIMP08670 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
VIMP08670 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
VIMP08670 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VIMP08670 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.66■□□□□ 0.26
VIMP08670 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.66■□□□□ 0.26
VIMP08670 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC16.66■□□□□ 0.26
VIMP08670 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VIMP08670 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
VIMP08670 CYP2D8P-201ENST00000433633 1490 ntBASIC16.66■□□□□ 0.26
VIMP08670 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.66■□□□□ 0.26
VIMP08670 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VIMP08670 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VIMP08670 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.66■□□□□ 0.26
VIMP08670 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VIMP08670 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 SNX18-202ENST00000343017 3140 ntBASIC16.65■□□□□ 0.26
VIMP08670 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.65■□□□□ 0.26
VIMP08670 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.65■□□□□ 0.26
VIMP08670 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.65■□□□□ 0.26
VIMP08670 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.65■□□□□ 0.26
VIMP08670 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
VIMP08670 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
VIMP08670 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC16.65■□□□□ 0.26
VIMP08670 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
VIMP08670 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms