Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 DKFZP434A062-201ENST00000573103 5021 ntBASIC12.48□□□□□ -0.41
HLA-DQA1P01909 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 GLDC-219ENST00000640208 420 ntTSL 2 BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 AL139011.1-202ENST00000642063 584 ntBASIC12.48□□□□□ -0.41
HLA-DQA1P01909 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 CICP24-201ENST00000605464 2705 ntBASIC12.48□□□□□ -0.41
HLA-DQA1P01909 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 GGT3P-204ENST00000453783 1664 ntBASIC12.48□□□□□ -0.41
HLA-DQA1P01909 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 KRT89P-201ENST00000620027 1478 ntBASIC12.47□□□□□ -0.41
HLA-DQA1P01909 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 BANP-203ENST00000393207 2438 ntTSL 2 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 TSPY17P-201ENST00000450329 467 ntBASIC12.47□□□□□ -0.41
HLA-DQA1P01909 TSPY15P-201ENST00000457163 923 ntBASIC12.47□□□□□ -0.41
HLA-DQA1P01909 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 AP003041.3-201ENST00000527151 707 ntBASIC12.47□□□□□ -0.41
HLA-DQA1P01909 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 BX088651.1-201ENST00000540551 451 ntBASIC12.47□□□□□ -0.41
HLA-DQA1P01909 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 AC106881.1-201ENST00000605849 3329 ntBASIC12.47□□□□□ -0.41
HLA-DQA1P01909 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DQA1P01909 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms