Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CTDNEP1O95476 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CTDNEP1O95476 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CTDNEP1O95476 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC19.06■□□□□ 0.64
CTDNEP1O95476 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTDNEP1O95476 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CTDNEP1O95476 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTDNEP1O95476 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
CTDNEP1O95476 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTDNEP1O95476 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC19.06■□□□□ 0.64
CTDNEP1O95476 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
CTDNEP1O95476 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CTDNEP1O95476 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC19.06■□□□□ 0.64
CTDNEP1O95476 U82695.1-201ENST00000635752 1889 ntBASIC19.06■□□□□ 0.64
CTDNEP1O95476 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTDNEP1O95476 NARF-206ENST00000457415 1668 ntTSL 5 BASIC19.06■□□□□ 0.64
CTDNEP1O95476 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CTDNEP1O95476 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTDNEP1O95476 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTDNEP1O95476 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CTDNEP1O95476 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC19.06■□□□□ 0.64
CTDNEP1O95476 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC19.06■□□□□ 0.64
CTDNEP1O95476 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CTDNEP1O95476 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
CTDNEP1O95476 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTDNEP1O95476 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTDNEP1O95476 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC19.06■□□□□ 0.64
CTDNEP1O95476 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CTDNEP1O95476 FOXO1B-201ENST00000504678 1527 ntBASIC19.05■□□□□ 0.64
CTDNEP1O95476 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CTDNEP1O95476 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
CTDNEP1O95476 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CTDNEP1O95476 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC19.05■□□□□ 0.64
CTDNEP1O95476 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CTDNEP1O95476 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
CTDNEP1O95476 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC19.05■□□□□ 0.64
CTDNEP1O95476 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CTDNEP1O95476 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
CTDNEP1O95476 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.05■□□□□ 0.64
CTDNEP1O95476 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CTDNEP1O95476 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CTDNEP1O95476 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19.05■□□□□ 0.64
CTDNEP1O95476 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC19.05■□□□□ 0.64
CTDNEP1O95476 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
CTDNEP1O95476 INO80E-210ENST00000567705 880 ntTSL 3 BASIC19.05■□□□□ 0.64
CTDNEP1O95476 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CTDNEP1O95476 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CTDNEP1O95476 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CTDNEP1O95476 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC19.05■□□□□ 0.64
CTDNEP1O95476 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CTDNEP1O95476 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC19.05■□□□□ 0.64
CTDNEP1O95476 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CTDNEP1O95476 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CTDNEP1O95476 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC19.05■□□□□ 0.64
CTDNEP1O95476 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CTDNEP1O95476 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC19.05■□□□□ 0.64
CTDNEP1O95476 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC19.05■□□□□ 0.64
CTDNEP1O95476 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC19.05■□□□□ 0.64
CTDNEP1O95476 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CTDNEP1O95476 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
CTDNEP1O95476 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC19.05■□□□□ 0.64
CTDNEP1O95476 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CTDNEP1O95476 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CTDNEP1O95476 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
CTDNEP1O95476 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CTDNEP1O95476 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CTDNEP1O95476 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
CTDNEP1O95476 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CTDNEP1O95476 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CTDNEP1O95476 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC19.04■□□□□ 0.64
CTDNEP1O95476 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CTDNEP1O95476 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CTDNEP1O95476 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CTDNEP1O95476 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CTDNEP1O95476 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CTDNEP1O95476 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CTDNEP1O95476 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CTDNEP1O95476 AL022342.1-201ENST00000400363 863 ntBASIC19.04■□□□□ 0.64
CTDNEP1O95476 MIR940-201ENST00000401276 94 ntBASIC19.04■□□□□ 0.64
CTDNEP1O95476 IMP4-203ENST00000409935 958 ntTSL 5 BASIC19.04■□□□□ 0.64
CTDNEP1O95476 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CTDNEP1O95476 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CTDNEP1O95476 POLD2P1-201ENST00000511220 997 ntBASIC19.04■□□□□ 0.64
CTDNEP1O95476 AC008677.1-201ENST00000519230 1561 ntBASIC19.04■□□□□ 0.64
CTDNEP1O95476 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC19.04■□□□□ 0.64
CTDNEP1O95476 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CTDNEP1O95476 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC19.04■□□□□ 0.64
CTDNEP1O95476 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.04■□□□□ 0.64
CTDNEP1O95476 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC19.04■□□□□ 0.64
CTDNEP1O95476 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.04■□□□□ 0.64
CTDNEP1O95476 AC091812.2-201ENST00000619081 385 ntBASIC19.04■□□□□ 0.64
CTDNEP1O95476 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC19.04■□□□□ 0.64
CTDNEP1O95476 AC092902.6-201ENST00000641783 218 ntBASIC19.04■□□□□ 0.64
CTDNEP1O95476 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CTDNEP1O95476 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC19.04■□□□□ 0.64
CTDNEP1O95476 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CTDNEP1O95476 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CTDNEP1O95476 AL589702.1-201ENST00000641229 1509 ntBASIC19.04■□□□□ 0.64
CTDNEP1O95476 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC19.04■□□□□ 0.64
CTDNEP1O95476 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms