Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 AC012640.2-201ENST00000561606 901 ntBASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 AP002414.3-201ENST00000589352 1468 ntBASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 AC104640.1-201ENST00000562617 2109 ntBASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 MIR4515-201ENST00000584082 81 ntBASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 ACTL9-202ENST00000612068 1252 ntBASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 AC004790.2-201ENST00000623588 572 ntBASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHA3Q9Y5H8 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PCDHA3Q9Y5H8 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
PCDHA3Q9Y5H8 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PCDHA3Q9Y5H8 AP005117.1-202ENST00000581724 1908 ntBASIC17.27■□□□□ 0.35
PCDHA3Q9Y5H8 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.27■□□□□ 0.35
PCDHA3Q9Y5H8 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PCDHA3Q9Y5H8 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.27■□□□□ 0.35
PCDHA3Q9Y5H8 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 FAM197Y8-203ENST00000450145 560 ntBASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 AC005593.1-201ENST00000624894 515 ntBASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 AC069224.1-201ENST00000566372 1715 ntBASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHA3Q9Y5H8 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms