Protein–RNA interactions for Protein: Q9Y2J0

RPH3A, Rabphilin-3A, humanhuman

Predicted RBP Predictions only

Length 694 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPH3AQ9Y2J0 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 AL391256.1-201ENST00000443260 1855 ntBASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 AL645728.1-201ENST00000366221 2101 ntBASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 AL035633.1-201ENST00000406139 838 ntBASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 AC005829.1-201ENST00000570002 483 ntBASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 CYP2A7P1-201ENST00000595391 815 ntBASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 C20orf181-201ENST00000623918 480 ntBASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.21■□□□□ 0.03
RPH3AQ9Y2J0 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
RPH3AQ9Y2J0 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC15.21■□□□□ 0.02
RPH3AQ9Y2J0 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
RPH3AQ9Y2J0 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
RPH3AQ9Y2J0 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 AP002472.1-201ENST00000577490 586 ntBASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 AC006277.1-201ENST00000624348 1610 ntBASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 AL671710.1-201ENST00000610245 2349 ntBASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RPH3AQ9Y2J0 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPH3AQ9Y2J0 RNF216P1-203ENST00000404404 2427 ntBASIC15.19■□□□□ 0.02
RPH3AQ9Y2J0 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15.19■□□□□ 0.02
RPH3AQ9Y2J0 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RPH3AQ9Y2J0 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPH3AQ9Y2J0 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RPH3AQ9Y2J0 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RPH3AQ9Y2J0 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPH3AQ9Y2J0 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
RPH3AQ9Y2J0 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPH3AQ9Y2J0 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPH3AQ9Y2J0 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RPH3AQ9Y2J0 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPH3AQ9Y2J0 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPH3AQ9Y2J0 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
RPH3AQ9Y2J0 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPH3AQ9Y2J0 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPH3AQ9Y2J0 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPH3AQ9Y2J0 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPH3AQ9Y2J0 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms