Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 PAUPAR-201ENST00000630360 2965 ntBASIC17.69■□□□□ 0.42
SIX2Q9NPC8 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SIX2Q9NPC8 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 AP002472.1-201ENST00000577490 586 ntBASIC17.68■□□□□ 0.42
SIX2Q9NPC8 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.68■□□□□ 0.42
SIX2Q9NPC8 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 U82695.1-201ENST00000635752 1889 ntBASIC17.67■□□□□ 0.42
SIX2Q9NPC8 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.67■□□□□ 0.42
SIX2Q9NPC8 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 MIR648-201ENST00000385046 94 ntBASIC17.67■□□□□ 0.42
SIX2Q9NPC8 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 PDPK2P-202ENST00000562415 1191 ntBASIC17.67■□□□□ 0.42
SIX2Q9NPC8 AC106730.1-201ENST00000566722 1090 ntBASIC17.67■□□□□ 0.42
SIX2Q9NPC8 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 AC140113.2-201ENST00000604370 208 ntBASIC17.67■□□□□ 0.42
SIX2Q9NPC8 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms