Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF41Q9H4P4 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF41Q9H4P4 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF41Q9H4P4 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC19.46■□□□□ 0.71
RNF41Q9H4P4 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF41Q9H4P4 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RNF41Q9H4P4 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF41Q9H4P4 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC19.46■□□□□ 0.71
RNF41Q9H4P4 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC19.46■□□□□ 0.71
RNF41Q9H4P4 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.7
RNF41Q9H4P4 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 KRT18P32-201ENST00000424695 1287 ntBASIC19.45■□□□□ 0.7
RNF41Q9H4P4 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 AC093520.2-201ENST00000561830 333 ntBASIC19.45■□□□□ 0.7
RNF41Q9H4P4 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 AC009093.7-201ENST00000623853 1223 ntBASIC19.45■□□□□ 0.7
RNF41Q9H4P4 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 AC005622.1-201ENST00000636801 1703 ntBASIC19.45■□□□□ 0.7
RNF41Q9H4P4 ALOX12P2-203ENST00000570921 1945 ntBASIC19.45■□□□□ 0.7
RNF41Q9H4P4 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC19.45■□□□□ 0.7
RNF41Q9H4P4 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 PCDHA14-201ENST00000506751 2298 ntBASIC19.44■□□□□ 0.7
RNF41Q9H4P4 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 PP14571-201ENST00000404327 934 ntTSL 2 BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 AC098859.1-201ENST00000502915 1238 ntBASIC19.44■□□□□ 0.7
RNF41Q9H4P4 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 GOLGA6L17P-202ENST00000614358 1398 ntBASIC19.44■□□□□ 0.7
RNF41Q9H4P4 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC19.44■□□□□ 0.7
RNF41Q9H4P4 U82695.1-201ENST00000635752 1889 ntBASIC19.43■□□□□ 0.7
RNF41Q9H4P4 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC19.43■□□□□ 0.7
RNF41Q9H4P4 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC19.43■□□□□ 0.7
RNF41Q9H4P4 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.43■□□□□ 0.7
RNF41Q9H4P4 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF41Q9H4P4 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF41Q9H4P4 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RNF41Q9H4P4 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF41Q9H4P4 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
RNF41Q9H4P4 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC19.43■□□□□ 0.7
RNF41Q9H4P4 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC19.43■□□□□ 0.7
RNF41Q9H4P4 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC19.43■□□□□ 0.7
RNF41Q9H4P4 SLC25A39P2-201ENST00000537614 270 ntBASIC19.43■□□□□ 0.7
RNF41Q9H4P4 AC027612.4-201ENST00000605371 583 ntBASIC19.43■□□□□ 0.7
RNF41Q9H4P4 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC19.43■□□□□ 0.7
RNF41Q9H4P4 SPTSSB-204ENST00000617024 1292 ntBASIC19.43■□□□□ 0.7
RNF41Q9H4P4 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC19.43■□□□□ 0.7
RNF41Q9H4P4 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF41Q9H4P4 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF41Q9H4P4 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF41Q9H4P4 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
RNF41Q9H4P4 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF41Q9H4P4 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms