Protein–RNA interactions for Protein: Q9BY71

LRRC3, Leucine-rich repeat-containing protein 3, humanhuman

Predictions only

Length 257 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC3Q9BY71 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LRRC3Q9BY71 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LRRC3Q9BY71 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
LRRC3Q9BY71 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.17■□□□□ 0.34
LRRC3Q9BY71 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.17■□□□□ 0.34
LRRC3Q9BY71 GSAP-205ENST00000430584 600 ntTSL 5 BASIC17.17■□□□□ 0.34
LRRC3Q9BY71 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
LRRC3Q9BY71 SPTLC1P1-201ENST00000447199 261 ntBASIC17.17■□□□□ 0.34
LRRC3Q9BY71 RNA5SP410-201ENST00000516285 106 ntBASIC17.17■□□□□ 0.34
LRRC3Q9BY71 AP002490.2-201ENST00000524791 560 ntBASIC17.17■□□□□ 0.34
LRRC3Q9BY71 AP005018.1-201ENST00000525475 301 ntBASIC17.17■□□□□ 0.34
LRRC3Q9BY71 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
LRRC3Q9BY71 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.17■□□□□ 0.34
LRRC3Q9BY71 AC005225.4-201ENST00000557330 545 ntBASIC17.17■□□□□ 0.34
LRRC3Q9BY71 AP001094.4-201ENST00000579008 2176 ntBASIC17.17■□□□□ 0.34
LRRC3Q9BY71 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.17■□□□□ 0.34
LRRC3Q9BY71 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.17■□□□□ 0.34
LRRC3Q9BY71 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
LRRC3Q9BY71 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
LRRC3Q9BY71 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.17■□□□□ 0.34
LRRC3Q9BY71 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
LRRC3Q9BY71 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LRRC3Q9BY71 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
LRRC3Q9BY71 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.17■□□□□ 0.34
LRRC3Q9BY71 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
LRRC3Q9BY71 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LRRC3Q9BY71 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 COX11-202ENST00000571584 1108 ntTSL 2 BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 SPDYE22P-201ENST00000582158 798 ntBASIC17.16■□□□□ 0.34
LRRC3Q9BY71 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 AC008738.7-201ENST00000609744 511 ntBASIC17.16■□□□□ 0.34
LRRC3Q9BY71 AC012645.4-201ENST00000610691 1061 ntBASIC17.16■□□□□ 0.34
LRRC3Q9BY71 AC009118.2-201ENST00000613275 655 ntBASIC17.16■□□□□ 0.34
LRRC3Q9BY71 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 AL035252.4-201ENST00000624174 288 ntBASIC17.16■□□□□ 0.34
LRRC3Q9BY71 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 CETN4P-206ENST00000642099 2168 ntBASIC17.16■□□□□ 0.34
LRRC3Q9BY71 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
LRRC3Q9BY71 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 AL080243.2-201ENST00000418783 582 ntBASIC17.15■□□□□ 0.34
LRRC3Q9BY71 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 MTND6P24-201ENST00000440466 518 ntBASIC17.15■□□□□ 0.34
LRRC3Q9BY71 REEP4-207ENST00000523293 913 ntTSL 3 BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 AL079307.3-201ENST00000556114 283 ntBASIC17.15■□□□□ 0.34
LRRC3Q9BY71 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 AL589739.1-201ENST00000607720 493 ntBASIC17.15■□□□□ 0.34
LRRC3Q9BY71 AL031731.1-201ENST00000642131 2094 ntBASIC17.15■□□□□ 0.34
LRRC3Q9BY71 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.15■□□□□ 0.34
LRRC3Q9BY71 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LRRC3Q9BY71 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms