Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.98■□□□□ 0.31
CDX2Q99626 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.98■□□□□ 0.31
CDX2Q99626 RN7SL555P-201ENST00000584742 339 ntBASIC16.98■□□□□ 0.31
CDX2Q99626 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC16.98■□□□□ 0.31
CDX2Q99626 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC16.98■□□□□ 0.31
CDX2Q99626 AC079336.7-201ENST00000623428 1078 ntBASIC16.98■□□□□ 0.31
CDX2Q99626 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC16.98■□□□□ 0.31
CDX2Q99626 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDX2Q99626 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX2Q99626 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX2Q99626 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDX2Q99626 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.98■□□□□ 0.31
CDX2Q99626 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDX2Q99626 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX2Q99626 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
CDX2Q99626 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
CDX2Q99626 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDX2Q99626 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX2Q99626 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX2Q99626 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CDX2Q99626 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX2Q99626 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.97■□□□□ 0.31
CDX2Q99626 AC006480.2-201ENST00000609770 1337 ntBASIC16.97■□□□□ 0.31
CDX2Q99626 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
CDX2Q99626 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX2Q99626 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX2Q99626 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX2Q99626 AC015818.8-201ENST00000587907 1519 ntBASIC16.97■□□□□ 0.31
CDX2Q99626 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX2Q99626 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX2Q99626 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
CDX2Q99626 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.97■□□□□ 0.31
CDX2Q99626 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX2Q99626 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC16.97■□□□□ 0.31
CDX2Q99626 MIR769-201ENST00000390225 118 ntBASIC16.97■□□□□ 0.31
CDX2Q99626 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CDX2Q99626 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.97■□□□□ 0.31
CDX2Q99626 AC069218.1-201ENST00000435269 762 ntBASIC16.97■□□□□ 0.31
CDX2Q99626 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC16.97■□□□□ 0.31
CDX2Q99626 RPL13P2-201ENST00000440687 659 ntBASIC16.97■□□□□ 0.31
CDX2Q99626 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC16.97■□□□□ 0.31
CDX2Q99626 PRKXP1-201ENST00000561423 1122 ntBASIC16.97■□□□□ 0.31
CDX2Q99626 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CDX2Q99626 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC16.97■□□□□ 0.31
CDX2Q99626 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC16.97■□□□□ 0.31
CDX2Q99626 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
CDX2Q99626 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC16.97■□□□□ 0.31
CDX2Q99626 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CDX2Q99626 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CDX2Q99626 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CDX2Q99626 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CDX2Q99626 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX2Q99626 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX2Q99626 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX2Q99626 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC16.97■□□□□ 0.31
CDX2Q99626 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CDX2Q99626 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC16.96■□□□□ 0.31
CDX2Q99626 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CDX2Q99626 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX2Q99626 AC093525.9-201ENST00000624961 1746 ntBASIC16.96■□□□□ 0.31
CDX2Q99626 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CDX2Q99626 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CDX2Q99626 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
CDX2Q99626 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.96■□□□□ 0.31
CDX2Q99626 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX2Q99626 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC16.96■□□□□ 0.31
CDX2Q99626 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX2Q99626 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC16.96■□□□□ 0.31
CDX2Q99626 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX2Q99626 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX2Q99626 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.96■□□□□ 0.31
CDX2Q99626 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC16.96■□□□□ 0.31
CDX2Q99626 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC16.96■□□□□ 0.31
CDX2Q99626 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.96■□□□□ 0.31
CDX2Q99626 EEF1DP6-201ENST00000449232 372 ntBASIC16.96■□□□□ 0.31
CDX2Q99626 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC16.96■□□□□ 0.31
CDX2Q99626 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC16.96■□□□□ 0.31
CDX2Q99626 AC078819.1-201ENST00000547454 765 ntBASIC16.96■□□□□ 0.31
CDX2Q99626 AC012085.1-201ENST00000548270 765 ntBASIC16.96■□□□□ 0.31
CDX2Q99626 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC16.96■□□□□ 0.31
CDX2Q99626 FGFR3P5-201ENST00000564496 886 ntBASIC16.96■□□□□ 0.31
CDX2Q99626 AC025279.2-201ENST00000569730 653 ntBASIC16.96■□□□□ 0.31
CDX2Q99626 MIR3147-201ENST00000577811 66 ntBASIC16.96■□□□□ 0.31
CDX2Q99626 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CDX2Q99626 NKG7-204ENST00000595217 816 ntTSL 2 BASIC16.96■□□□□ 0.31
CDX2Q99626 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC16.96■□□□□ 0.31
CDX2Q99626 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC16.96■□□□□ 0.31
CDX2Q99626 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX2Q99626 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX2Q99626 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CDX2Q99626 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.96■□□□□ 0.31
CDX2Q99626 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.96■□□□□ 0.31
CDX2Q99626 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX2Q99626 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX2Q99626 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX2Q99626 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
CDX2Q99626 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX2Q99626 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CDX2Q99626 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
CDX2Q99626 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms