Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS39Q96JC1 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS39Q96JC1 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
VPS39Q96JC1 KRT18P27-201ENST00000427733 1299 ntBASIC16.63■□□□□ 0.25
VPS39Q96JC1 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS39Q96JC1 AC073648.2-201ENST00000510116 352 ntBASIC16.63■□□□□ 0.25
VPS39Q96JC1 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS39Q96JC1 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS39Q96JC1 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS39Q96JC1 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
VPS39Q96JC1 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS39Q96JC1 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS39Q96JC1 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS39Q96JC1 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS39Q96JC1 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS39Q96JC1 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS39Q96JC1 AL365203.3-201ENST00000609742 2057 ntBASIC16.63■□□□□ 0.25
VPS39Q96JC1 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS39Q96JC1 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS39Q96JC1 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS39Q96JC1 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS39Q96JC1 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS39Q96JC1 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS39Q96JC1 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS39Q96JC1 AL139384.1-201ENST00000612143 3047 ntBASIC16.62■□□□□ 0.25
VPS39Q96JC1 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS39Q96JC1 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
VPS39Q96JC1 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS39Q96JC1 GPAA1P2-202ENST00000606848 1787 ntBASIC16.62■□□□□ 0.25
VPS39Q96JC1 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.62■□□□□ 0.25
VPS39Q96JC1 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.62■□□□□ 0.25
VPS39Q96JC1 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.62■□□□□ 0.25
VPS39Q96JC1 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS39Q96JC1 OR7E14P-202ENST00000530490 1290 ntBASIC16.62■□□□□ 0.25
VPS39Q96JC1 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.62■□□□□ 0.25
VPS39Q96JC1 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS39Q96JC1 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS39Q96JC1 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 AC012313.10-201ENST00000623509 926 ntBASIC16.62■□□□□ 0.25
VPS39Q96JC1 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS39Q96JC1 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS39Q96JC1 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS39Q96JC1 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.62■□□□□ 0.25
VPS39Q96JC1 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
VPS39Q96JC1 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
VPS39Q96JC1 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 AC132872.4-202ENST00000622924 2756 ntBASIC16.62■□□□□ 0.25
VPS39Q96JC1 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.62■□□□□ 0.25
VPS39Q96JC1 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS39Q96JC1 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS39Q96JC1 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS39Q96JC1 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VPS39Q96JC1 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS39Q96JC1 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
VPS39Q96JC1 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.61■□□□□ 0.25
VPS39Q96JC1 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS39Q96JC1 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS39Q96JC1 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.61■□□□□ 0.25
VPS39Q96JC1 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS39Q96JC1 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS39Q96JC1 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS39Q96JC1 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
VPS39Q96JC1 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS39Q96JC1 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS39Q96JC1 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS39Q96JC1 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
VPS39Q96JC1 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS39Q96JC1 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS39Q96JC1 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
VPS39Q96JC1 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS39Q96JC1 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS39Q96JC1 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS39Q96JC1 AC073621.1-201ENST00000392730 636 ntBASIC16.61■□□□□ 0.25
VPS39Q96JC1 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
VPS39Q96JC1 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS39Q96JC1 RPS2P1-201ENST00000434010 821 ntBASIC16.61■□□□□ 0.25
VPS39Q96JC1 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS39Q96JC1 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS39Q96JC1 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms