Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
C9orf40Q8IXQ3 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
C9orf40Q8IXQ3 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.23■□□□□ 0.03
C9orf40Q8IXQ3 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
C9orf40Q8IXQ3 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
C9orf40Q8IXQ3 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
C9orf40Q8IXQ3 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
C9orf40Q8IXQ3 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
C9orf40Q8IXQ3 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
C9orf40Q8IXQ3 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
C9orf40Q8IXQ3 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
C9orf40Q8IXQ3 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
C9orf40Q8IXQ3 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
C9orf40Q8IXQ3 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 AL139400.1-201ENST00000366220 510 ntBASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 TSEN15P1-201ENST00000423257 515 ntBASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 AC005622.1-201ENST00000636801 1703 ntBASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.22■□□□□ 0.03
C9orf40Q8IXQ3 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
C9orf40Q8IXQ3 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
C9orf40Q8IXQ3 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.21■□□□□ 0.02
C9orf40Q8IXQ3 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
C9orf40Q8IXQ3 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.02
C9orf40Q8IXQ3 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.02
C9orf40Q8IXQ3 AC079328.2-201ENST00000561241 3354 ntBASIC15.21■□□□□ 0.02
C9orf40Q8IXQ3 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
C9orf40Q8IXQ3 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
C9orf40Q8IXQ3 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
C9orf40Q8IXQ3 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
C9orf40Q8IXQ3 KRT18P28-201ENST00000453838 1332 ntBASIC15.2■□□□□ 0.02
C9orf40Q8IXQ3 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
C9orf40Q8IXQ3 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
C9orf40Q8IXQ3 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.2■□□□□ 0.02
C9orf40Q8IXQ3 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.2■□□□□ 0.02
C9orf40Q8IXQ3 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
C9orf40Q8IXQ3 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
C9orf40Q8IXQ3 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
C9orf40Q8IXQ3 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms