Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SKA3Q8IX90 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SKA3Q8IX90 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SKA3Q8IX90 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SKA3Q8IX90 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SKA3Q8IX90 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SKA3Q8IX90 AC006538.1-201ENST00000567905 1585 ntBASIC14.68□□□□□ -0.06
SKA3Q8IX90 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.68□□□□□ -0.06
SKA3Q8IX90 BCAR1-209ENST00000546196 1340 ntBASIC14.68□□□□□ -0.06
SKA3Q8IX90 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC14.68□□□□□ -0.06
SKA3Q8IX90 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
SKA3Q8IX90 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SKA3Q8IX90 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SKA3Q8IX90 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
SKA3Q8IX90 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SKA3Q8IX90 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
SKA3Q8IX90 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
SKA3Q8IX90 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC14.68□□□□□ -0.06
SKA3Q8IX90 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC14.68□□□□□ -0.06
SKA3Q8IX90 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC14.68□□□□□ -0.06
SKA3Q8IX90 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SKA3Q8IX90 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC14.68□□□□□ -0.06
SKA3Q8IX90 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SKA3Q8IX90 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC14.68□□□□□ -0.06
SKA3Q8IX90 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
SKA3Q8IX90 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
SKA3Q8IX90 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC14.68□□□□□ -0.06
SKA3Q8IX90 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SKA3Q8IX90 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
SKA3Q8IX90 DDT-204ENST00000404092 805 ntTSL 3 BASIC14.68□□□□□ -0.06
SKA3Q8IX90 CDK2AP2P3-201ENST00000422476 372 ntBASIC14.68□□□□□ -0.06
SKA3Q8IX90 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SKA3Q8IX90 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC14.68□□□□□ -0.06
SKA3Q8IX90 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC14.68□□□□□ -0.06
SKA3Q8IX90 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC14.68□□□□□ -0.06
SKA3Q8IX90 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC14.68□□□□□ -0.06
SKA3Q8IX90 AL031432.2-201ENST00000566714 459 ntBASIC14.68□□□□□ -0.06
SKA3Q8IX90 AL928711.1-201ENST00000570165 459 ntBASIC14.68□□□□□ -0.06
SKA3Q8IX90 SIGLEC29P-201ENST00000599873 1114 ntBASIC14.68□□□□□ -0.06
SKA3Q8IX90 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC14.68□□□□□ -0.06
SKA3Q8IX90 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SKA3Q8IX90 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SKA3Q8IX90 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SKA3Q8IX90 PCDHA14-201ENST00000506751 2298 ntBASIC14.68□□□□□ -0.06
SKA3Q8IX90 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC14.68□□□□□ -0.06
SKA3Q8IX90 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SKA3Q8IX90 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.68□□□□□ -0.06
SKA3Q8IX90 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SKA3Q8IX90 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SKA3Q8IX90 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SKA3Q8IX90 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SKA3Q8IX90 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 KRT8P39-201ENST00000396270 1433 ntBASIC14.67□□□□□ -0.06
SKA3Q8IX90 AC025580.3-201ENST00000617932 1424 ntBASIC14.67□□□□□ -0.06
SKA3Q8IX90 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.67□□□□□ -0.06
SKA3Q8IX90 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
SKA3Q8IX90 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC14.67□□□□□ -0.06
SKA3Q8IX90 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
SKA3Q8IX90 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14.67□□□□□ -0.06
SKA3Q8IX90 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
SKA3Q8IX90 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC14.67□□□□□ -0.06
SKA3Q8IX90 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.67□□□□□ -0.06
SKA3Q8IX90 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
SKA3Q8IX90 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC14.67□□□□□ -0.06
SKA3Q8IX90 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
SKA3Q8IX90 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC14.67□□□□□ -0.06
SKA3Q8IX90 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC14.67□□□□□ -0.06
SKA3Q8IX90 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC14.67□□□□□ -0.06
SKA3Q8IX90 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
SKA3Q8IX90 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.67□□□□□ -0.06
SKA3Q8IX90 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC14.67□□□□□ -0.06
SKA3Q8IX90 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC14.67□□□□□ -0.06
SKA3Q8IX90 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC14.67□□□□□ -0.06
SKA3Q8IX90 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC14.67□□□□□ -0.06
SKA3Q8IX90 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SKA3Q8IX90 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms