Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 AC009102.3-201ENST00000623118 1491 ntBASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 AC067750.1-201ENST00000608826 6545 ntBASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 NIFKP9-201ENST00000419265 221 ntBASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 AC004980.1-204ENST00000429707 299 ntBASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 AC091390.4-202ENST00000476426 537 ntBASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 DENND3-207ENST00000518347 850 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 CKBP1-201ENST00000565489 1086 ntBASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 SPIB-206ENST00000596074 847 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 AL596087.1-201ENST00000400979 1969 ntBASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 AL163051.1-201ENST00000569214 1512 ntBASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 UROS-202ENST00000368778 1556 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28AQ8IWP9 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 AC005562.1-201ENST00000583030 3219 ntBASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 RARRES2P10-201ENST00000564312 460 ntBASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms