Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
VRK3Q8IV63 AC243562.1-201ENST00000560672 389 ntBASIC16.14■□□□□ 0.17
VRK3Q8IV63 MIR4469-201ENST00000583919 79 ntBASIC16.14■□□□□ 0.17
VRK3Q8IV63 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.14■□□□□ 0.17
VRK3Q8IV63 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.14■□□□□ 0.17
VRK3Q8IV63 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
VRK3Q8IV63 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.14■□□□□ 0.17
VRK3Q8IV63 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VRK3Q8IV63 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.14■□□□□ 0.17
VRK3Q8IV63 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.14■□□□□ 0.17
VRK3Q8IV63 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
VRK3Q8IV63 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
VRK3Q8IV63 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK3Q8IV63 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK3Q8IV63 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VRK3Q8IV63 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK3Q8IV63 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK3Q8IV63 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK3Q8IV63 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK3Q8IV63 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK3Q8IV63 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK3Q8IV63 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK3Q8IV63 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK3Q8IV63 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK3Q8IV63 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK3Q8IV63 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK3Q8IV63 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK3Q8IV63 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK3Q8IV63 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK3Q8IV63 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VRK3Q8IV63 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VRK3Q8IV63 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK3Q8IV63 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VRK3Q8IV63 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 CEND1P1-201ENST00000451006 455 ntBASIC16.13■□□□□ 0.17
VRK3Q8IV63 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 YBX1P5-201ENST00000509441 847 ntBASIC16.13■□□□□ 0.17
VRK3Q8IV63 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VRK3Q8IV63 REXO1L8P-201ENST00000604378 1897 ntBASIC16.13■□□□□ 0.17
VRK3Q8IV63 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK3Q8IV63 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK3Q8IV63 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VRK3Q8IV63 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK3Q8IV63 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK3Q8IV63 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK3Q8IV63 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VRK3Q8IV63 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK3Q8IV63 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.13■□□□□ 0.17
VRK3Q8IV63 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK3Q8IV63 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK3Q8IV63 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
VRK3Q8IV63 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.12■□□□□ 0.17
VRK3Q8IV63 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
VRK3Q8IV63 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.12■□□□□ 0.17
VRK3Q8IV63 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
VRK3Q8IV63 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VRK3Q8IV63 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
VRK3Q8IV63 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.12■□□□□ 0.17
VRK3Q8IV63 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.12■□□□□ 0.17
VRK3Q8IV63 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK3Q8IV63 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK3Q8IV63 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.12■□□□□ 0.17
VRK3Q8IV63 AC093724.1-201ENST00000448659 1027 ntBASIC16.12■□□□□ 0.17
VRK3Q8IV63 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK3Q8IV63 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.12■□□□□ 0.17
VRK3Q8IV63 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
VRK3Q8IV63 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.12■□□□□ 0.17
VRK3Q8IV63 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK3Q8IV63 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
VRK3Q8IV63 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.12■□□□□ 0.17
VRK3Q8IV63 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VRK3Q8IV63 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK3Q8IV63 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VRK3Q8IV63 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK3Q8IV63 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.12■□□□□ 0.17
VRK3Q8IV63 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms