Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 IRS3P-201ENST00000223076 1006 ntBASIC10.28□□□□□ -0.76
LINC00643Q86TS7 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 AC012414.1-201ENST00000556676 535 ntBASIC10.28□□□□□ -0.76
LINC00643Q86TS7 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 MED29-202ENST00000594368 1471 ntTSL 2 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 THSD7A-205ENST00000617773 10583 ntAPPRIS ALT2 TSL 5 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 TNN-203ENST00000622870 3719 ntTSL 5 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 BX276092.7-203ENST00000637198 1536 ntBASIC10.28□□□□□ -0.76
LINC00643Q86TS7 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
LINC00643Q86TS7 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.76
LINC00643Q86TS7 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC10.27□□□□□ -0.76
LINC00643Q86TS7 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC10.27□□□□□ -0.76
LINC00643Q86TS7 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
LINC00643Q86TS7 VAMP4-201ENST00000236192 5159 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.76
LINC00643Q86TS7 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
LINC00643Q86TS7 AC069224.1-201ENST00000566372 1715 ntBASIC10.27□□□□□ -0.76
LINC00643Q86TS7 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC10.27□□□□□ -0.76
LINC00643Q86TS7 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
LINC00643Q86TS7 AGAP7P-201ENST00000582299 2062 ntBASIC10.27□□□□□ -0.76
LINC00643Q86TS7 AGAP14-201ENST00000624701 2060 ntBASIC10.27□□□□□ -0.76
LINC00643Q86TS7 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
LINC00643Q86TS7 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.76
LINC00643Q86TS7 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC10.27□□□□□ -0.76
LINC00643Q86TS7 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC10.27□□□□□ -0.76
LINC00643Q86TS7 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC10.27□□□□□ -0.76
LINC00643Q86TS7 HARS-203ENST00000431330 1774 ntTSL 2 BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 SERP1-205ENST00000487153 657 ntTSL 4 BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 HES2-206ENST00000489730 730 ntTSL 2 BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 AL121906.2-201ENST00000621597 723 ntBASIC10.27□□□□□ -0.77
LINC00643Q86TS7 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 TKT-201ENST00000296289 1931 ntTSL 5 BASIC10.27□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms