Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 RPP21-221ENST00000428040 594 ntTSL 2 BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 AC092865.5-201ENST00000545435 363 ntBASIC19.95■□□□□ 0.78
VPS53Q5VIR6 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 AL662844.4-201ENST00000606367 2838 ntBASIC19.94■□□□□ 0.78
VPS53Q5VIR6 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 ME2P1-201ENST00000426028 1970 ntBASIC19.94■□□□□ 0.78
VPS53Q5VIR6 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 AC092474.2-201ENST00000424288 719 ntBASIC19.94■□□□□ 0.78
VPS53Q5VIR6 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 MTDHP5-201ENST00000598980 586 ntBASIC19.94■□□□□ 0.78
VPS53Q5VIR6 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS53Q5VIR6 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 AC109635.5-201ENST00000533593 962 ntBASIC19.93■□□□□ 0.78
VPS53Q5VIR6 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 C20orf181-201ENST00000623918 480 ntBASIC19.93■□□□□ 0.78
VPS53Q5VIR6 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS53Q5VIR6 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms