Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
USP39Q53GS9 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
USP39Q53GS9 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USP39Q53GS9 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP39Q53GS9 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.8■□□□□ 0.28
USP39Q53GS9 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
USP39Q53GS9 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP39Q53GS9 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USP39Q53GS9 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP39Q53GS9 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP39Q53GS9 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.8■□□□□ 0.28
USP39Q53GS9 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USP39Q53GS9 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP39Q53GS9 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
USP39Q53GS9 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
USP39Q53GS9 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
USP39Q53GS9 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP39Q53GS9 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
USP39Q53GS9 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP39Q53GS9 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.79■□□□□ 0.28
USP39Q53GS9 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
USP39Q53GS9 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
USP39Q53GS9 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
USP39Q53GS9 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP39Q53GS9 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.79■□□□□ 0.28
USP39Q53GS9 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC16.79■□□□□ 0.28
USP39Q53GS9 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
USP39Q53GS9 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.79■□□□□ 0.28
USP39Q53GS9 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.79■□□□□ 0.28
USP39Q53GS9 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.79■□□□□ 0.28
USP39Q53GS9 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.79■□□□□ 0.28
USP39Q53GS9 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP39Q53GS9 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
USP39Q53GS9 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
USP39Q53GS9 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP39Q53GS9 AC016027.1-202ENST00000607927 1699 ntBASIC16.78■□□□□ 0.28
USP39Q53GS9 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.78■□□□□ 0.28
USP39Q53GS9 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USP39Q53GS9 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USP39Q53GS9 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.78■□□□□ 0.28
USP39Q53GS9 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USP39Q53GS9 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USP39Q53GS9 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USP39Q53GS9 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USP39Q53GS9 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USP39Q53GS9 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USP39Q53GS9 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USP39Q53GS9 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USP39Q53GS9 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC16.78■□□□□ 0.28
USP39Q53GS9 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.78■□□□□ 0.28
USP39Q53GS9 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC16.78■□□□□ 0.28
USP39Q53GS9 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USP39Q53GS9 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USP39Q53GS9 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
USP39Q53GS9 AC004233.3-201ENST00000607794 1269 ntBASIC16.78■□□□□ 0.28
USP39Q53GS9 AC018529.1-201ENST00000613063 361 ntBASIC16.78■□□□□ 0.28
USP39Q53GS9 AL662799.1-202ENST00000614205 422 ntBASIC16.78■□□□□ 0.28
USP39Q53GS9 AL590560.3-201ENST00000623350 461 ntBASIC16.78■□□□□ 0.28
USP39Q53GS9 AC025048.6-201ENST00000634326 1161 ntBASIC16.78■□□□□ 0.28
USP39Q53GS9 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USP39Q53GS9 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
USP39Q53GS9 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
USP39Q53GS9 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USP39Q53GS9 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.78■□□□□ 0.28
USP39Q53GS9 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USP39Q53GS9 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USP39Q53GS9 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USP39Q53GS9 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.78■□□□□ 0.28
USP39Q53GS9 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
USP39Q53GS9 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.78■□□□□ 0.28
USP39Q53GS9 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.78■□□□□ 0.28
USP39Q53GS9 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USP39Q53GS9 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USP39Q53GS9 AC100757.3-201ENST00000622361 1406 ntBASIC16.78■□□□□ 0.28
USP39Q53GS9 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
USP39Q53GS9 AC060834.1-201ENST00000443027 2032 ntBASIC16.77■□□□□ 0.28
USP39Q53GS9 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.77■□□□□ 0.28
USP39Q53GS9 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
USP39Q53GS9 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
USP39Q53GS9 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
USP39Q53GS9 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
USP39Q53GS9 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
USP39Q53GS9 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
USP39Q53GS9 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
USP39Q53GS9 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
USP39Q53GS9 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
USP39Q53GS9 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.77■□□□□ 0.28
USP39Q53GS9 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
USP39Q53GS9 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.77■□□□□ 0.28
USP39Q53GS9 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
USP39Q53GS9 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.77■□□□□ 0.28
USP39Q53GS9 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.77■□□□□ 0.28
USP39Q53GS9 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC16.77■□□□□ 0.28
USP39Q53GS9 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.77■□□□□ 0.28
USP39Q53GS9 AC003101.2-201ENST00000612557 442 ntBASIC16.77■□□□□ 0.28
USP39Q53GS9 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.77■□□□□ 0.28
USP39Q53GS9 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
USP39Q53GS9 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.77■□□□□ 0.28
USP39Q53GS9 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.77■□□□□ 0.28
USP39Q53GS9 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms