Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CHD9Q3L8U1 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CHD9Q3L8U1 KRT90P-201ENST00000549264 1064 ntBASIC17.19■□□□□ 0.34
CHD9Q3L8U1 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.19■□□□□ 0.34
CHD9Q3L8U1 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CHD9Q3L8U1 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CHD9Q3L8U1 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 AC133539.2-201ENST00000604757 467 ntBASIC17.18■□□□□ 0.34
CHD9Q3L8U1 AL008638.5-201ENST00000623814 1298 ntBASIC17.18■□□□□ 0.34
CHD9Q3L8U1 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 KRT8P19-201ENST00000551916 1455 ntBASIC17.18■□□□□ 0.34
CHD9Q3L8U1 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 OLR1-203ENST00000432556 950 ntTSL 2 BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 AC004898.1-201ENST00000451057 766 ntBASIC17.18■□□□□ 0.34
CHD9Q3L8U1 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 ATF5-205ENST00000600336 682 ntTSL 2 BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.18■□□□□ 0.34
CHD9Q3L8U1 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 SPCS2P2-201ENST00000603270 608 ntBASIC17.17■□□□□ 0.34
CHD9Q3L8U1 PRKN-211ENST00000615065 261 ntTSL 5 BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 AC008687.7-202ENST00000637404 953 ntBASIC17.17■□□□□ 0.34
CHD9Q3L8U1 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 TSACC-208ENST00000481479 741 ntTSL 2 BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 PTP4A1P2-201ENST00000546033 454 ntBASIC17.17■□□□□ 0.34
CHD9Q3L8U1 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.17■□□□□ 0.34
CHD9Q3L8U1 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 CYP4F24P-201ENST00000586049 1580 ntBASIC17.16■□□□□ 0.34
CHD9Q3L8U1 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms