Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.57■□□□□ 0.4
SOX4Q06945 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX4Q06945 MTND6P24-201ENST00000440466 518 ntBASIC17.57■□□□□ 0.4
SOX4Q06945 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SOX4Q06945 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX4Q06945 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.57■□□□□ 0.4
SOX4Q06945 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.57■□□□□ 0.4
SOX4Q06945 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.57■□□□□ 0.4
SOX4Q06945 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.57■□□□□ 0.4
SOX4Q06945 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.57■□□□□ 0.4
SOX4Q06945 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC17.57■□□□□ 0.4
SOX4Q06945 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX4Q06945 AD000864.1-201ENST00000624076 2295 ntBASIC17.57■□□□□ 0.4
SOX4Q06945 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX4Q06945 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
SOX4Q06945 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX4Q06945 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX4Q06945 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SOX4Q06945 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
SOX4Q06945 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.57■□□□□ 0.4
SOX4Q06945 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX4Q06945 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SOX4Q06945 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX4Q06945 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
SOX4Q06945 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.56■□□□□ 0.4
SOX4Q06945 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX4Q06945 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.56■□□□□ 0.4
SOX4Q06945 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX4Q06945 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX4Q06945 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX4Q06945 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.56■□□□□ 0.4
SOX4Q06945 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX4Q06945 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX4Q06945 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX4Q06945 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX4Q06945 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SOX4Q06945 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SOX4Q06945 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX4Q06945 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
SOX4Q06945 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX4Q06945 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.56■□□□□ 0.4
SOX4Q06945 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SOX4Q06945 RPL37AP1-201ENST00000412502 279 ntBASIC17.56■□□□□ 0.4
SOX4Q06945 AC241585.1-201ENST00000433527 519 ntBASIC17.56■□□□□ 0.4
SOX4Q06945 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.56■□□□□ 0.4
SOX4Q06945 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.56■□□□□ 0.4
SOX4Q06945 HLA-V-204ENST00000476601 1289 ntBASIC17.56■□□□□ 0.4
SOX4Q06945 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.56■□□□□ 0.4
SOX4Q06945 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.56■□□□□ 0.4
SOX4Q06945 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.56■□□□□ 0.4
SOX4Q06945 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
SOX4Q06945 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.56■□□□□ 0.4
SOX4Q06945 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SOX4Q06945 ALOX12P2-203ENST00000570921 1945 ntBASIC17.56■□□□□ 0.4
SOX4Q06945 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.56■□□□□ 0.4
SOX4Q06945 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX4Q06945 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX4Q06945 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SOX4Q06945 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.56■□□□□ 0.4
SOX4Q06945 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SOX4Q06945 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.56■□□□□ 0.4
SOX4Q06945 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX4Q06945 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SOX4Q06945 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.56■□□□□ 0.4
SOX4Q06945 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX4Q06945 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX4Q06945 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.55■□□□□ 0.4
SOX4Q06945 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX4Q06945 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.55■□□□□ 0.4
SOX4Q06945 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX4Q06945 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.55■□□□□ 0.4
SOX4Q06945 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX4Q06945 AL035456.1-201ENST00000456064 1369 ntBASIC17.55■□□□□ 0.4
SOX4Q06945 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.55■□□□□ 0.4
SOX4Q06945 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.55■□□□□ 0.4
SOX4Q06945 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.55■□□□□ 0.4
SOX4Q06945 PCDHA12-202ENST00000613593 2588 ntBASIC17.55■□□□□ 0.4
SOX4Q06945 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX4Q06945 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX4Q06945 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.55■□□□□ 0.4
SOX4Q06945 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.55■□□□□ 0.4
SOX4Q06945 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
SOX4Q06945 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SOX4Q06945 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC17.55■□□□□ 0.4
SOX4Q06945 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.55■□□□□ 0.4
SOX4Q06945 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC17.55■□□□□ 0.4
SOX4Q06945 RN7SL204P-201ENST00000582831 262 ntBASIC17.55■□□□□ 0.4
SOX4Q06945 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.55■□□□□ 0.4
SOX4Q06945 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.55■□□□□ 0.4
SOX4Q06945 TEX28P1-201ENST00000613479 1221 ntBASIC17.55■□□□□ 0.4
SOX4Q06945 TEX28P2-201ENST00000617764 1221 ntBASIC17.55■□□□□ 0.4
SOX4Q06945 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SOX4Q06945 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.55■□□□□ 0.4
SOX4Q06945 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SOX4Q06945 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX4Q06945 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX4Q06945 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.55■□□□□ 0.4
SOX4Q06945 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.55■□□□□ 0.4
SOX4Q06945 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SOX4Q06945 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms