Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HNF4AP41235 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HNF4AP41235 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
HNF4AP41235 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
HNF4AP41235 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.09■□□□□ 0.17
HNF4AP41235 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HNF4AP41235 CXCL1P1-201ENST00000502804 216 ntBASIC16.09■□□□□ 0.17
HNF4AP41235 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.09■□□□□ 0.17
HNF4AP41235 AC106730.1-201ENST00000566722 1090 ntBASIC16.09■□□□□ 0.17
HNF4AP41235 AC018845.2-201ENST00000568326 409 ntBASIC16.09■□□□□ 0.17
HNF4AP41235 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.09■□□□□ 0.17
HNF4AP41235 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
HNF4AP41235 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HNF4AP41235 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.09■□□□□ 0.17
HNF4AP41235 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HNF4AP41235 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
HNF4AP41235 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HNF4AP41235 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HNF4AP41235 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HNF4AP41235 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HNF4AP41235 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
HNF4AP41235 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
HNF4AP41235 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
HNF4AP41235 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HNF4AP41235 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.09■□□□□ 0.17
HNF4AP41235 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
HNF4AP41235 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HNF4AP41235 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
HNF4AP41235 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
HNF4AP41235 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
HNF4AP41235 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
HNF4AP41235 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
HNF4AP41235 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HNF4AP41235 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.08■□□□□ 0.16
HNF4AP41235 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.08■□□□□ 0.16
HNF4AP41235 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
HNF4AP41235 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
HNF4AP41235 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.08■□□□□ 0.16
HNF4AP41235 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.08■□□□□ 0.16
HNF4AP41235 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
HNF4AP41235 IGLL3P-201ENST00000412472 434 ntBASIC16.08■□□□□ 0.16
HNF4AP41235 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.08■□□□□ 0.16
HNF4AP41235 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.08■□□□□ 0.16
HNF4AP41235 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.08■□□□□ 0.16
HNF4AP41235 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.08■□□□□ 0.16
HNF4AP41235 MIR4515-201ENST00000584082 81 ntBASIC16.08■□□□□ 0.16
HNF4AP41235 AC064836.3-201ENST00000607928 673 ntBASIC16.08■□□□□ 0.16
HNF4AP41235 ACTL9-202ENST00000612068 1252 ntBASIC16.08■□□□□ 0.16
HNF4AP41235 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
HNF4AP41235 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.08■□□□□ 0.16
HNF4AP41235 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HNF4AP41235 PKD1P5-201ENST00000532415 10291 ntBASIC16.08■□□□□ 0.16
HNF4AP41235 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HNF4AP41235 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HNF4AP41235 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
HNF4AP41235 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HNF4AP41235 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
HNF4AP41235 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HNF4AP41235 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
HNF4AP41235 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HNF4AP41235 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HNF4AP41235 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.08■□□□□ 0.16
HNF4AP41235 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.08■□□□□ 0.16
HNF4AP41235 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HNF4AP41235 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
HNF4AP41235 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HNF4AP41235 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HNF4AP41235 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.07■□□□□ 0.16
HNF4AP41235 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.07■□□□□ 0.16
HNF4AP41235 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.07■□□□□ 0.16
HNF4AP41235 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HNF4AP41235 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HNF4AP41235 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HNF4AP41235 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
HNF4AP41235 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
HNF4AP41235 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.07■□□□□ 0.16
HNF4AP41235 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
HNF4AP41235 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
HNF4AP41235 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.07■□□□□ 0.16
HNF4AP41235 KRT18P2-201ENST00000447938 1258 ntBASIC16.07■□□□□ 0.16
HNF4AP41235 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.07■□□□□ 0.16
HNF4AP41235 HCG4B-203ENST00000450128 991 ntBASIC16.07■□□□□ 0.16
HNF4AP41235 AL513480.1-201ENST00000451731 511 ntBASIC16.07■□□□□ 0.16
HNF4AP41235 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
HNF4AP41235 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.07■□□□□ 0.16
HNF4AP41235 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.07■□□□□ 0.16
HNF4AP41235 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.07■□□□□ 0.16
HNF4AP41235 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.07■□□□□ 0.16
HNF4AP41235 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
HNF4AP41235 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.07■□□□□ 0.16
HNF4AP41235 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.07■□□□□ 0.16
HNF4AP41235 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.07■□□□□ 0.16
HNF4AP41235 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.07■□□□□ 0.16
HNF4AP41235 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HNF4AP41235 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.07■□□□□ 0.16
HNF4AP41235 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.07■□□□□ 0.16
HNF4AP41235 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
HNF4AP41235 GPAA1P2-202ENST00000606848 1787 ntBASIC16.07■□□□□ 0.16
HNF4AP41235 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HNF4AP41235 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms