Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
CUX1P39880 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
CUX1P39880 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
CUX1P39880 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
CUX1P39880 RPL7P3-201ENST00000441388 714 ntBASIC27.16■■□□□ 1.94
CUX1P39880 AC245100.5-201ENST00000452108 331 ntBASIC27.16■■□□□ 1.94
CUX1P39880 AP001889.1-201ENST00000525414 633 ntBASIC27.16■■□□□ 1.94
CUX1P39880 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC27.16■■□□□ 1.94
CUX1P39880 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC27.16■■□□□ 1.94
CUX1P39880 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC27.16■■□□□ 1.94
CUX1P39880 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CUX1P39880 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC27.16■■□□□ 1.94
CUX1P39880 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC27.16■■□□□ 1.94
CUX1P39880 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC27.16■■□□□ 1.94
CUX1P39880 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC27.16■■□□□ 1.94
CUX1P39880 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC27.16■■□□□ 1.94
CUX1P39880 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
CUX1P39880 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC27.16■■□□□ 1.94
CUX1P39880 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CUX1P39880 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
CUX1P39880 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
CUX1P39880 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CUX1P39880 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC27.16■■□□□ 1.94
CUX1P39880 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CUX1P39880 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC27.16■■□□□ 1.94
CUX1P39880 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
CUX1P39880 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC27.16■■□□□ 1.94
CUX1P39880 RPL28-203ENST00000428193 573 ntTSL 2 BASIC27.16■■□□□ 1.94
CUX1P39880 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC27.16■■□□□ 1.94
CUX1P39880 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CUX1P39880 TDH-203ENST00000531764 1110 ntBASIC27.16■■□□□ 1.94
CUX1P39880 AP000812.2-201ENST00000538934 718 ntBASIC27.16■■□□□ 1.94
CUX1P39880 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC27.16■■□□□ 1.94
CUX1P39880 RPL28-207ENST00000558815 616 ntTSL 2 BASIC27.16■■□□□ 1.94
CUX1P39880 PIGL-212ENST00000581006 554 ntTSL 4 BASIC27.16■■□□□ 1.94
CUX1P39880 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC27.16■■□□□ 1.94
CUX1P39880 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC27.16■■□□□ 1.94
CUX1P39880 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC27.15■■□□□ 1.94
CUX1P39880 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC27.15■■□□□ 1.94
CUX1P39880 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC27.15■■□□□ 1.94
CUX1P39880 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC27.15■■□□□ 1.94
CUX1P39880 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
CUX1P39880 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC27.15■■□□□ 1.94
CUX1P39880 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC27.15■■□□□ 1.94
CUX1P39880 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC27.15■■□□□ 1.94
CUX1P39880 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC27.15■■□□□ 1.94
CUX1P39880 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC27.15■■□□□ 1.94
CUX1P39880 FAM86LP-201ENST00000478302 853 ntBASIC27.15■■□□□ 1.94
CUX1P39880 AC106760.1-201ENST00000508690 800 ntBASIC27.15■■□□□ 1.94
CUX1P39880 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC27.15■■□□□ 1.94
CUX1P39880 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC27.15■■□□□ 1.94
CUX1P39880 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC27.15■■□□□ 1.94
CUX1P39880 APRT-204ENST00000563655 709 ntTSL 5 BASIC27.15■■□□□ 1.94
CUX1P39880 AC244093.1-201ENST00000610837 814 ntBASIC27.15■■□□□ 1.94
CUX1P39880 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC27.15■■□□□ 1.94
CUX1P39880 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC27.15■■□□□ 1.94
CUX1P39880 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
CUX1P39880 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC27.15■■□□□ 1.94
CUX1P39880 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.94
CUX1P39880 AC068880.1-201ENST00000507289 2297 ntBASIC27.14■■□□□ 1.94
CUX1P39880 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CUX1P39880 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC27.14■■□□□ 1.94
CUX1P39880 MSTO2P-201ENST00000314835 1709 ntBASIC27.14■■□□□ 1.94
CUX1P39880 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC27.14■■□□□ 1.94
CUX1P39880 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC27.14■■□□□ 1.94
CUX1P39880 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC27.14■■□□□ 1.94
CUX1P39880 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CUX1P39880 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC27.14■■□□□ 1.94
CUX1P39880 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC27.14■■□□□ 1.94
CUX1P39880 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC27.14■■□□□ 1.94
CUX1P39880 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC27.14■■□□□ 1.93
CUX1P39880 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
CUX1P39880 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC27.14■■□□□ 1.93
CUX1P39880 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC27.14■■□□□ 1.93
CUX1P39880 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC27.14■■□□□ 1.93
CUX1P39880 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC27.14■■□□□ 1.93
CUX1P39880 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC27.13■■□□□ 1.93
CUX1P39880 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
CUX1P39880 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
CUX1P39880 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
CUX1P39880 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
CUX1P39880 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC27.13■■□□□ 1.93
CUX1P39880 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
CUX1P39880 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC27.13■■□□□ 1.93
CUX1P39880 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
CUX1P39880 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC27.13■■□□□ 1.93
CUX1P39880 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
CUX1P39880 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC27.13■■□□□ 1.93
CUX1P39880 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC27.13■■□□□ 1.93
CUX1P39880 AL022328.1-201ENST00000610050 478 ntBASIC27.13■■□□□ 1.93
CUX1P39880 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
CUX1P39880 AC005622.1-201ENST00000636801 1703 ntBASIC27.13■■□□□ 1.93
CUX1P39880 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC27.13■■□□□ 1.93
CUX1P39880 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC27.12■■□□□ 1.93
CUX1P39880 AC141586.5-201ENST00000624546 2050 ntBASIC27.12■■□□□ 1.93
CUX1P39880 AC004945.1-201ENST00000416738 983 ntBASIC27.12■■□□□ 1.93
CUX1P39880 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC27.12■■□□□ 1.93
CUX1P39880 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC27.12■■□□□ 1.93
CUX1P39880 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
CUX1P39880 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC27.12■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms