Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC12.81□□□□□ -0.36
HOXD3P31249 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HOXD3P31249 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXD3P31249 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC12.81□□□□□ -0.36
HOXD3P31249 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC12.81□□□□□ -0.36
HOXD3P31249 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HOXD3P31249 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC12.81□□□□□ -0.36
HOXD3P31249 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC12.81□□□□□ -0.36
HOXD3P31249 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXD3P31249 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 AL671710.1-201ENST00000610245 2349 ntBASIC12.8□□□□□ -0.36
HOXD3P31249 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
HOXD3P31249 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
HOXD3P31249 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC12.8□□□□□ -0.36
HOXD3P31249 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
HOXD3P31249 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
HOXD3P31249 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC12.8□□□□□ -0.36
HOXD3P31249 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
HOXD3P31249 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC12.8□□□□□ -0.36
HOXD3P31249 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC12.8□□□□□ -0.36
HOXD3P31249 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
HOXD3P31249 RN7SL589P-201ENST00000481268 310 ntBASIC12.8□□□□□ -0.36
HOXD3P31249 INGX-202ENST00000489074 768 ntBASIC12.8□□□□□ -0.36
HOXD3P31249 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC12.8□□□□□ -0.36
HOXD3P31249 RARRES2P8-201ENST00000566335 367 ntBASIC12.8□□□□□ -0.36
HOXD3P31249 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC12.8□□□□□ -0.36
HOXD3P31249 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
HOXD3P31249 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
HOXD3P31249 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC12.8□□□□□ -0.36
HOXD3P31249 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
HOXD3P31249 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC12.8□□□□□ -0.36
HOXD3P31249 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC12.8□□□□□ -0.36
HOXD3P31249 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC12.8□□□□□ -0.36
HOXD3P31249 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HOXD3P31249 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC12.8□□□□□ -0.36
HOXD3P31249 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
HOXD3P31249 KRT8P39-201ENST00000396270 1433 ntBASIC12.79□□□□□ -0.36
HOXD3P31249 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC12.79□□□□□ -0.36
HOXD3P31249 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
HOXD3P31249 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 UXT-AS1-201ENST00000590504 1525 ntBASIC12.79□□□□□ -0.36
HOXD3P31249 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
HOXD3P31249 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC12.79□□□□□ -0.36
HOXD3P31249 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC12.79□□□□□ -0.36
HOXD3P31249 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 MIR943-201ENST00000401286 94 ntBASIC12.79□□□□□ -0.36
HOXD3P31249 CENPM-205ENST00000404067 905 ntTSL 3 BASIC12.79□□□□□ -0.36
HOXD3P31249 FAM58DP-201ENST00000428076 619 ntBASIC12.79□□□□□ -0.36
HOXD3P31249 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC12.79□□□□□ -0.36
HOXD3P31249 PNKD-204ENST00000436005 978 ntTSL 5 BASIC12.79□□□□□ -0.36
HOXD3P31249 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC12.79□□□□□ -0.36
HOXD3P31249 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 RNA5SP421-201ENST00000516864 134 ntBASIC12.79□□□□□ -0.36
HOXD3P31249 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
HOXD3P31249 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC12.79□□□□□ -0.36
HOXD3P31249 TSFM-210ENST00000550559 897 ntTSL 5 BASIC12.79□□□□□ -0.36
HOXD3P31249 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC12.79□□□□□ -0.36
HOXD3P31249 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC12.79□□□□□ -0.36
HOXD3P31249 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC12.79□□□□□ -0.36
HOXD3P31249 AL139011.1-202ENST00000642063 584 ntBASIC12.79□□□□□ -0.36
HOXD3P31249 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms