Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TPM1P09493 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TPM1P09493 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TPM1P09493 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TPM1P09493 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
TPM1P09493 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.31■□□□□ 0.52
TPM1P09493 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TPM1P09493 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TPM1P09493 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TPM1P09493 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TPM1P09493 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.31■□□□□ 0.52
TPM1P09493 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TPM1P09493 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TPM1P09493 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TPM1P09493 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
TPM1P09493 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC18.31■□□□□ 0.52
TPM1P09493 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TPM1P09493 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
TPM1P09493 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TPM1P09493 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TPM1P09493 KRT17P6-201ENST00000453795 1220 ntBASIC18.31■□□□□ 0.52
TPM1P09493 DUX4L26-201ENST00000489078 1255 ntBASIC18.31■□□□□ 0.52
TPM1P09493 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
TPM1P09493 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.31■□□□□ 0.52
TPM1P09493 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TPM1P09493 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
TPM1P09493 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC18.31■□□□□ 0.52
TPM1P09493 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC18.31■□□□□ 0.52
TPM1P09493 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
TPM1P09493 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TPM1P09493 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
TPM1P09493 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC18.31■□□□□ 0.52
TPM1P09493 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TPM1P09493 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.3■□□□□ 0.52
TPM1P09493 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 NSUN5P1-202ENST00000421140 1535 ntBASIC18.3■□□□□ 0.52
TPM1P09493 NSUN5P2-203ENST00000457352 1529 ntBASIC18.3■□□□□ 0.52
TPM1P09493 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
TPM1P09493 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.3■□□□□ 0.52
TPM1P09493 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.3■□□□□ 0.52
TPM1P09493 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.3■□□□□ 0.52
TPM1P09493 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
TPM1P09493 BNIP3P18-201ENST00000593976 575 ntBASIC18.3■□□□□ 0.52
TPM1P09493 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.3■□□□□ 0.52
TPM1P09493 AC010331.1-201ENST00000611423 582 ntBASIC18.3■□□□□ 0.52
TPM1P09493 AC114341.1-201ENST00000618070 349 ntBASIC18.3■□□□□ 0.52
TPM1P09493 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.3■□□□□ 0.52
TPM1P09493 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.3■□□□□ 0.52
TPM1P09493 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC18.3■□□□□ 0.52
TPM1P09493 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC18.3■□□□□ 0.52
TPM1P09493 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.3■□□□□ 0.52
TPM1P09493 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC18.3■□□□□ 0.52
TPM1P09493 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
TPM1P09493 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TPM1P09493 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC18.3■□□□□ 0.52
TPM1P09493 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.3■□□□□ 0.52
TPM1P09493 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.3■□□□□ 0.52
TPM1P09493 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TPM1P09493 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
TPM1P09493 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TPM1P09493 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC18.29■□□□□ 0.52
TPM1P09493 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.29■□□□□ 0.52
TPM1P09493 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM1P09493 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM1P09493 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM1P09493 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TPM1P09493 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM1P09493 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM1P09493 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TPM1P09493 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TPM1P09493 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.29■□□□□ 0.52
TPM1P09493 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.29■□□□□ 0.52
TPM1P09493 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TPM1P09493 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.29■□□□□ 0.52
TPM1P09493 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
TPM1P09493 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM1P09493 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TPM1P09493 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.29■□□□□ 0.52
TPM1P09493 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms