Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 TMBIM7P-203ENST00000641617 1718 ntBASIC12.5□□□□□ -0.41
HLA-DQA1P01909 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 TPO-203ENST00000346956 2923 ntTSL 5 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 AL109954.1-202ENST00000564051 2148 ntBASIC12.49□□□□□ -0.41
HLA-DQA1P01909 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 AC097637.2-201ENST00000624096 1997 ntBASIC12.49□□□□□ -0.41
HLA-DQA1P01909 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 HARS-203ENST00000431330 1774 ntTSL 2 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 MMP23A-201ENST00000234610 1017 ntBASIC12.49□□□□□ -0.41
HLA-DQA1P01909 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 AC096633.1-201ENST00000422446 749 ntBASIC12.49□□□□□ -0.41
HLA-DQA1P01909 SLC25A1P2-201ENST00000430693 912 ntBASIC12.49□□□□□ -0.41
HLA-DQA1P01909 PVRIG2P-201ENST00000435460 978 ntBASIC12.49□□□□□ -0.41
HLA-DQA1P01909 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 AC128688.1-201ENST00000487626 519 ntBASIC12.49□□□□□ -0.41
HLA-DQA1P01909 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DQA1P01909 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC12.48□□□□□ -0.41
HLA-DQA1P01909 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms