Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX2-2O95096 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
NKX2-2O95096 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.24■□□□□ 0.03
NKX2-2O95096 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
NKX2-2O95096 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
NKX2-2O95096 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX2-2O95096 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
NKX2-2O95096 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
NKX2-2O95096 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
NKX2-2O95096 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX2-2O95096 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX2-2O95096 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
NKX2-2O95096 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.24■□□□□ 0.03
NKX2-2O95096 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.24■□□□□ 0.03
NKX2-2O95096 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
NKX2-2O95096 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
NKX2-2O95096 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
NKX2-2O95096 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.23■□□□□ 0.03
NKX2-2O95096 AC004832.2-201ENST00000426397 482 ntBASIC15.23■□□□□ 0.03
NKX2-2O95096 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.23■□□□□ 0.03
NKX2-2O95096 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.23■□□□□ 0.03
NKX2-2O95096 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.23■□□□□ 0.03
NKX2-2O95096 RARRES2P8-201ENST00000566335 367 ntBASIC15.23■□□□□ 0.03
NKX2-2O95096 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.23■□□□□ 0.03
NKX2-2O95096 AC091812.2-201ENST00000619081 385 ntBASIC15.23■□□□□ 0.03
NKX2-2O95096 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
NKX2-2O95096 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 TNRC18P3-201ENST00000441896 2691 ntBASIC15.23■□□□□ 0.03
NKX2-2O95096 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.23■□□□□ 0.03
NKX2-2O95096 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.23■□□□□ 0.03
NKX2-2O95096 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.23■□□□□ 0.03
NKX2-2O95096 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
NKX2-2O95096 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.23■□□□□ 0.03
NKX2-2O95096 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NKX2-2O95096 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-2O95096 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-2O95096 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.22■□□□□ 0.03
NKX2-2O95096 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
NKX2-2O95096 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-2O95096 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
NKX2-2O95096 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
NKX2-2O95096 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
NKX2-2O95096 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
NKX2-2O95096 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-2O95096 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-2O95096 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
NKX2-2O95096 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.22■□□□□ 0.03
NKX2-2O95096 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-2O95096 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
NKX2-2O95096 AC073439.1-201ENST00000624121 1774 ntBASIC15.22■□□□□ 0.03
NKX2-2O95096 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-2O95096 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
NKX2-2O95096 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
NKX2-2O95096 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.22■□□□□ 0.03
NKX2-2O95096 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-2O95096 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.22■□□□□ 0.03
NKX2-2O95096 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.22■□□□□ 0.03
NKX2-2O95096 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
NKX2-2O95096 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.22■□□□□ 0.03
NKX2-2O95096 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-2O95096 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-2O95096 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-2O95096 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-2O95096 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-2O95096 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-2O95096 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
NKX2-2O95096 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-2O95096 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-2O95096 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-2O95096 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-2O95096 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.22■□□□□ 0.03
NKX2-2O95096 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX2-2O95096 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.22■□□□□ 0.03
NKX2-2O95096 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-2O95096 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.21■□□□□ 0.03
NKX2-2O95096 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.21■□□□□ 0.03
NKX2-2O95096 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-2O95096 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NKX2-2O95096 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms