Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18.07■□□□□ 0.48
CLDN3O15551 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.07■□□□□ 0.48
CLDN3O15551 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.07■□□□□ 0.48
CLDN3O15551 AC008267.7-201ENST00000624570 1194 ntBASIC18.07■□□□□ 0.48
CLDN3O15551 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.07■□□□□ 0.48
CLDN3O15551 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.07■□□□□ 0.48
CLDN3O15551 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.07■□□□□ 0.48
CLDN3O15551 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC18.07■□□□□ 0.48
CLDN3O15551 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLDN3O15551 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLDN3O15551 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLDN3O15551 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CLDN3O15551 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC18.07■□□□□ 0.48
CLDN3O15551 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN3O15551 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN3O15551 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC18.06■□□□□ 0.48
CLDN3O15551 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC18.06■□□□□ 0.48
CLDN3O15551 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN3O15551 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CLDN3O15551 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN3O15551 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN3O15551 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN3O15551 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CLDN3O15551 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN3O15551 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CLDN3O15551 AC005237.2-201ENST00000434368 219 ntBASIC18.06■□□□□ 0.48
CLDN3O15551 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.06■□□□□ 0.48
CLDN3O15551 KRT8P23-201ENST00000560090 1207 ntBASIC18.06■□□□□ 0.48
CLDN3O15551 LINC01225-203ENST00000563550 1244 ntBASIC18.06■□□□□ 0.48
CLDN3O15551 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN3O15551 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN3O15551 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC18.06■□□□□ 0.48
CLDN3O15551 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN3O15551 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN3O15551 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN3O15551 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CLDN3O15551 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CLDN3O15551 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN3O15551 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN3O15551 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.06■□□□□ 0.48
CLDN3O15551 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CLDN3O15551 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC18.06■□□□□ 0.48
CLDN3O15551 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN3O15551 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.06■□□□□ 0.48
CLDN3O15551 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CLDN3O15551 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CLDN3O15551 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC18.05■□□□□ 0.48
CLDN3O15551 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC18.05■□□□□ 0.48
CLDN3O15551 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CLDN3O15551 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC18.05■□□□□ 0.48
CLDN3O15551 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CLDN3O15551 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CLDN3O15551 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN3O15551 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN3O15551 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN3O15551 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN3O15551 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN3O15551 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC18.05■□□□□ 0.48
CLDN3O15551 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC18.05■□□□□ 0.48
CLDN3O15551 AC027307.2-201ENST00000591252 911 ntBASIC18.05■□□□□ 0.48
CLDN3O15551 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN3O15551 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.05■□□□□ 0.48
CLDN3O15551 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CLDN3O15551 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN3O15551 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC18.05■□□□□ 0.48
CLDN3O15551 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN3O15551 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.05■□□□□ 0.48
CLDN3O15551 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CLDN3O15551 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
CLDN3O15551 AC092171.3-201ENST00000610122 2651 ntBASIC18.05■□□□□ 0.48
CLDN3O15551 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN3O15551 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN3O15551 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
CLDN3O15551 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN3O15551 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
CLDN3O15551 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18.04■□□□□ 0.48
CLDN3O15551 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC18.04■□□□□ 0.48
CLDN3O15551 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN3O15551 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
CLDN3O15551 AC018695.7-201ENST00000624587 2492 ntBASIC18.04■□□□□ 0.48
CLDN3O15551 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN3O15551 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN3O15551 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC18.04■□□□□ 0.48
CLDN3O15551 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN3O15551 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.04■□□□□ 0.48
CLDN3O15551 AL627223.1-201ENST00000416693 442 ntBASIC18.04■□□□□ 0.48
CLDN3O15551 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC18.04■□□□□ 0.48
CLDN3O15551 AC092183.1-201ENST00000469884 875 ntBASIC18.04■□□□□ 0.48
CLDN3O15551 AC069335.1-201ENST00000489972 472 ntBASIC18.04■□□□□ 0.48
CLDN3O15551 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.04■□□□□ 0.48
CLDN3O15551 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.04■□□□□ 0.48
CLDN3O15551 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC18.04■□□□□ 0.48
CLDN3O15551 AC093520.2-201ENST00000561830 333 ntBASIC18.04■□□□□ 0.48
CLDN3O15551 AL138918.1-201ENST00000568306 659 ntBASIC18.04■□□□□ 0.48
CLDN3O15551 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.04■□□□□ 0.48
CLDN3O15551 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC18.04■□□□□ 0.48
CLDN3O15551 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC18.04■□□□□ 0.48
CLDN3O15551 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC18.04■□□□□ 0.48
CLDN3O15551 AC027612.4-201ENST00000605371 583 ntBASIC18.04■□□□□ 0.48
CLDN3O15551 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms