Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 TFAMP1-201ENST00000412727 736 ntBASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 AC254562.1-201ENST00000417586 456 ntBASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 HLA-J-202ENST00000469281 1241 ntBASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 AC006538.1-201ENST00000567905 1585 ntBASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 AL596257.1-201ENST00000641463 2694 ntBASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 RNF216P1-203ENST00000404404 2427 ntBASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 RPS8P6-201ENST00000426177 609 ntBASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 SPDYE11-202ENST00000450699 704 ntBASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 SPDYE9P-201ENST00000570642 692 ntBASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 SPDYE10P-202ENST00000612005 668 ntBASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 SPDYE8P-202ENST00000612377 668 ntBASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 AC105339.1-204ENST00000636249 355 ntBASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 AL162727.3-201ENST00000635661 2787 ntBASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 AL512652.2-201ENST00000625156 1716 ntBASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 AC078925.2-201ENST00000624013 1973 ntBASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
TRIM39Q9HCM9 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 DNAJB3-202ENST00000449667 1266 ntBASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 RN7SL589P-201ENST00000481268 310 ntBASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms