Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
MMP28Q9H239 STX3-203ENST00000529177 1571 ntTSL 2 BASIC14.71□□□□□ -0.05
MMP28Q9H239 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
MMP28Q9H239 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
MMP28Q9H239 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
MMP28Q9H239 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.71□□□□□ -0.05
MMP28Q9H239 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
MMP28Q9H239 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
MMP28Q9H239 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC14.71□□□□□ -0.05
MMP28Q9H239 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
MMP28Q9H239 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC14.71□□□□□ -0.06
MMP28Q9H239 AL645728.1-201ENST00000366221 2101 ntBASIC14.71□□□□□ -0.06
MMP28Q9H239 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
MMP28Q9H239 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
MMP28Q9H239 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
MMP28Q9H239 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.7□□□□□ -0.06
MMP28Q9H239 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC14.7□□□□□ -0.06
MMP28Q9H239 AC005332.1-201ENST00000577698 1310 ntBASIC14.7□□□□□ -0.06
MMP28Q9H239 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 AL359258.3-201ENST00000622910 2331 ntBASIC14.7□□□□□ -0.06
MMP28Q9H239 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.7□□□□□ -0.06
MMP28Q9H239 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.7□□□□□ -0.06
MMP28Q9H239 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.7□□□□□ -0.06
MMP28Q9H239 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 BAALC-202ENST00000306391 243 ntTSL 5 BASIC14.7□□□□□ -0.06
MMP28Q9H239 BAALC-204ENST00000330955 222 ntTSL 5 BASIC14.7□□□□□ -0.06
MMP28Q9H239 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC14.7□□□□□ -0.06
MMP28Q9H239 KRT18P65-201ENST00000439811 1286 ntBASIC14.7□□□□□ -0.06
MMP28Q9H239 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC14.7□□□□□ -0.06
MMP28Q9H239 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC14.7□□□□□ -0.06
MMP28Q9H239 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC14.7□□□□□ -0.06
MMP28Q9H239 TOLLIP-AS1-201ENST00000530897 939 ntBASIC14.7□□□□□ -0.06
MMP28Q9H239 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC14.7□□□□□ -0.06
MMP28Q9H239 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC14.7□□□□□ -0.06
MMP28Q9H239 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC14.7□□□□□ -0.06
MMP28Q9H239 AC005332.3-201ENST00000589904 676 ntBASIC14.7□□□□□ -0.06
MMP28Q9H239 WDR6-223ENST00000627177 207 ntTSL 2 BASIC14.7□□□□□ -0.06
MMP28Q9H239 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.7□□□□□ -0.06
MMP28Q9H239 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC14.7□□□□□ -0.06
MMP28Q9H239 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
MMP28Q9H239 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.7□□□□□ -0.06
MMP28Q9H239 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.7□□□□□ -0.06
MMP28Q9H239 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
MMP28Q9H239 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
MMP28Q9H239 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
MMP28Q9H239 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
MMP28Q9H239 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.69□□□□□ -0.06
MMP28Q9H239 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.69□□□□□ -0.06
MMP28Q9H239 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
MMP28Q9H239 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
MMP28Q9H239 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
MMP28Q9H239 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.69□□□□□ -0.06
MMP28Q9H239 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
MMP28Q9H239 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.69□□□□□ -0.06
MMP28Q9H239 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.69□□□□□ -0.06
MMP28Q9H239 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
MMP28Q9H239 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
MMP28Q9H239 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC14.69□□□□□ -0.06
MMP28Q9H239 TSPY12P-201ENST00000421279 868 ntBASIC14.69□□□□□ -0.06
MMP28Q9H239 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC14.69□□□□□ -0.06
MMP28Q9H239 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC14.69□□□□□ -0.06
MMP28Q9H239 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC14.69□□□□□ -0.06
MMP28Q9H239 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC14.69□□□□□ -0.06
MMP28Q9H239 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms