Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 VMA21-202ENST00000370361 693 ntTSL 5 BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 AC007967.4-201ENST00000614700 386 ntBASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 FOXO1B-201ENST00000504678 1527 ntBASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC21.03■□□□□ 0.96
CHMP4AQ9BY43 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 KLF2P3-201ENST00000451977 1087 ntBASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 MAX-210ENST00000555419 765 ntTSL 5 BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 RPL28-205ENST00000558131 444 ntTSL 5 BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 AC140878.1-201ENST00000565277 250 ntBASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 COQ4-205ENST00000609948 956 ntTSL 2 BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC21.02■□□□□ 0.96
CHMP4AQ9BY43 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
CHMP4AQ9BY43 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CHMP4AQ9BY43 GOLGA2P9-201ENST00000596977 1937 ntBASIC21.02■□□□□ 0.95
CHMP4AQ9BY43 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CHMP4AQ9BY43 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC21.02■□□□□ 0.95
CHMP4AQ9BY43 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.95
CHMP4AQ9BY43 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 AL139384.1-201ENST00000612143 3047 ntBASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 AC020916.1-201ENST00000587762 1774 ntBASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 AC026979.3-201ENST00000607315 403 ntBASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 MIR6080-201ENST00000617359 66 ntBASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms