Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP28Q96RU2 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.94■□□□□ 0.62
USP28Q96RU2 AC092910.1-201ENST00000482027 1129 ntBASIC18.94■□□□□ 0.62
USP28Q96RU2 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.94■□□□□ 0.62
USP28Q96RU2 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
USP28Q96RU2 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.94■□□□□ 0.62
USP28Q96RU2 RN7SL510P-201ENST00000581311 263 ntBASIC18.94■□□□□ 0.62
USP28Q96RU2 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
USP28Q96RU2 AC020765.3-201ENST00000613051 740 ntBASIC18.94■□□□□ 0.62
USP28Q96RU2 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.94■□□□□ 0.62
USP28Q96RU2 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
USP28Q96RU2 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP28Q96RU2 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP28Q96RU2 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP28Q96RU2 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP28Q96RU2 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.94■□□□□ 0.62
USP28Q96RU2 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP28Q96RU2 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
USP28Q96RU2 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
USP28Q96RU2 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USP28Q96RU2 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC18.93■□□□□ 0.62
USP28Q96RU2 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP28Q96RU2 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
USP28Q96RU2 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USP28Q96RU2 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
USP28Q96RU2 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP28Q96RU2 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP28Q96RU2 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
USP28Q96RU2 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USP28Q96RU2 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC18.93■□□□□ 0.62
USP28Q96RU2 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP28Q96RU2 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP28Q96RU2 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP28Q96RU2 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.93■□□□□ 0.62
USP28Q96RU2 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.93■□□□□ 0.62
USP28Q96RU2 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.93■□□□□ 0.62
USP28Q96RU2 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USP28Q96RU2 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.93■□□□□ 0.62
USP28Q96RU2 MIR4515-201ENST00000584082 81 ntBASIC18.93■□□□□ 0.62
USP28Q96RU2 AC104692.2-201ENST00000603054 253 ntBASIC18.93■□□□□ 0.62
USP28Q96RU2 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP28Q96RU2 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC18.93■□□□□ 0.62
USP28Q96RU2 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP28Q96RU2 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
USP28Q96RU2 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP28Q96RU2 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
USP28Q96RU2 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC18.93■□□□□ 0.62
USP28Q96RU2 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
USP28Q96RU2 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP28Q96RU2 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC18.93■□□□□ 0.62
USP28Q96RU2 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP28Q96RU2 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
USP28Q96RU2 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.92■□□□□ 0.62
USP28Q96RU2 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC18.92■□□□□ 0.62
USP28Q96RU2 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC18.92■□□□□ 0.62
USP28Q96RU2 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
USP28Q96RU2 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.92■□□□□ 0.62
USP28Q96RU2 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.92■□□□□ 0.62
USP28Q96RU2 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.92■□□□□ 0.62
USP28Q96RU2 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.92■□□□□ 0.62
USP28Q96RU2 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.92■□□□□ 0.62
USP28Q96RU2 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18.92■□□□□ 0.62
USP28Q96RU2 RPS15-212ENST00000593052 629 ntTSL 2 BASIC18.92■□□□□ 0.62
USP28Q96RU2 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.92■□□□□ 0.62
USP28Q96RU2 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.92■□□□□ 0.62
USP28Q96RU2 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.92■□□□□ 0.62
USP28Q96RU2 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC18.92■□□□□ 0.62
USP28Q96RU2 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP28Q96RU2 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.92■□□□□ 0.62
USP28Q96RU2 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
USP28Q96RU2 CROCCP1-201ENST00000426910 5675 ntBASIC18.91■□□□□ 0.62
USP28Q96RU2 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP28Q96RU2 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC18.91■□□□□ 0.62
USP28Q96RU2 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms