Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.83■□□□□ 0.28
USP39Q53GS9 AC009118.2-201ENST00000613275 655 ntBASIC16.83■□□□□ 0.28
USP39Q53GS9 AC011676.5-201ENST00000624864 2660 ntBASIC16.83■□□□□ 0.28
USP39Q53GS9 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC16.83■□□□□ 0.28
USP39Q53GS9 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
USP39Q53GS9 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
USP39Q53GS9 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
USP39Q53GS9 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
USP39Q53GS9 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.83■□□□□ 0.28
USP39Q53GS9 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP39Q53GS9 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP39Q53GS9 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP39Q53GS9 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.82■□□□□ 0.28
USP39Q53GS9 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP39Q53GS9 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP39Q53GS9 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP39Q53GS9 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP39Q53GS9 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.82■□□□□ 0.28
USP39Q53GS9 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP39Q53GS9 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
USP39Q53GS9 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
USP39Q53GS9 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP39Q53GS9 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
USP39Q53GS9 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
USP39Q53GS9 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP39Q53GS9 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.82■□□□□ 0.28
USP39Q53GS9 PIN1P1-201ENST00000412108 996 ntBASIC16.82■□□□□ 0.28
USP39Q53GS9 AC092580.3-201ENST00000430932 139 ntBASIC16.82■□□□□ 0.28
USP39Q53GS9 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.82■□□□□ 0.28
USP39Q53GS9 AP005018.1-201ENST00000525475 301 ntBASIC16.82■□□□□ 0.28
USP39Q53GS9 CR383656.12-201ENST00000549567 513 ntBASIC16.82■□□□□ 0.28
USP39Q53GS9 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
USP39Q53GS9 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
USP39Q53GS9 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.82■□□□□ 0.28
USP39Q53GS9 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC16.82■□□□□ 0.28
USP39Q53GS9 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP39Q53GS9 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP39Q53GS9 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
USP39Q53GS9 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP39Q53GS9 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP39Q53GS9 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP39Q53GS9 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
USP39Q53GS9 AC116353.5-201ENST00000638148 1699 ntBASIC16.81■□□□□ 0.28
USP39Q53GS9 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
USP39Q53GS9 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP39Q53GS9 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
USP39Q53GS9 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP39Q53GS9 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
USP39Q53GS9 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
USP39Q53GS9 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.81■□□□□ 0.28
USP39Q53GS9 TOP3BP1-201ENST00000420768 1380 ntBASIC16.81■□□□□ 0.28
USP39Q53GS9 AC084018.2-201ENST00000613093 2607 ntBASIC16.81■□□□□ 0.28
USP39Q53GS9 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP39Q53GS9 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP39Q53GS9 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
USP39Q53GS9 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.81■□□□□ 0.28
USP39Q53GS9 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.81■□□□□ 0.28
USP39Q53GS9 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC16.81■□□□□ 0.28
USP39Q53GS9 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.81■□□□□ 0.28
USP39Q53GS9 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.81■□□□□ 0.28
USP39Q53GS9 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.81■□□□□ 0.28
USP39Q53GS9 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.81■□□□□ 0.28
USP39Q53GS9 AC073592.8-201ENST00000624126 511 ntBASIC16.81■□□□□ 0.28
USP39Q53GS9 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP39Q53GS9 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP39Q53GS9 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP39Q53GS9 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP39Q53GS9 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP39Q53GS9 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP39Q53GS9 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP39Q53GS9 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP39Q53GS9 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.81■□□□□ 0.28
USP39Q53GS9 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.8■□□□□ 0.28
USP39Q53GS9 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.8■□□□□ 0.28
USP39Q53GS9 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP39Q53GS9 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USP39Q53GS9 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP39Q53GS9 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP39Q53GS9 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
USP39Q53GS9 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP39Q53GS9 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.8■□□□□ 0.28
USP39Q53GS9 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USP39Q53GS9 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USP39Q53GS9 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP39Q53GS9 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP39Q53GS9 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.8■□□□□ 0.28
USP39Q53GS9 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
USP39Q53GS9 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.8■□□□□ 0.28
USP39Q53GS9 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.8■□□□□ 0.28
USP39Q53GS9 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP39Q53GS9 AC004890.2-204ENST00000481968 304 ntBASIC16.8■□□□□ 0.28
USP39Q53GS9 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USP39Q53GS9 SERBP1P5-201ENST00000510079 1181 ntBASIC16.8■□□□□ 0.28
USP39Q53GS9 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.8■□□□□ 0.28
USP39Q53GS9 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC16.8■□□□□ 0.28
USP39Q53GS9 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC16.8■□□□□ 0.28
USP39Q53GS9 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.8■□□□□ 0.28
USP39Q53GS9 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
USP39Q53GS9 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.8■□□□□ 0.28
USP39Q53GS9 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms