Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.34■□□□□ 0.05
RNF4P78317 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.34■□□□□ 0.05
RNF4P78317 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
RNF4P78317 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
RNF4P78317 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC15.34■□□□□ 0.05
RNF4P78317 IGHV3-62-201ENST00000520057 340 ntBASIC15.34■□□□□ 0.05
RNF4P78317 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.34■□□□□ 0.05
RNF4P78317 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.34■□□□□ 0.05
RNF4P78317 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.34■□□□□ 0.05
RNF4P78317 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.34■□□□□ 0.05
RNF4P78317 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC15.34■□□□□ 0.05
RNF4P78317 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.34■□□□□ 0.05
RNF4P78317 AC020765.3-201ENST00000613051 740 ntBASIC15.34■□□□□ 0.05
RNF4P78317 AC008267.7-201ENST00000624570 1194 ntBASIC15.34■□□□□ 0.05
RNF4P78317 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.34■□□□□ 0.05
RNF4P78317 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC15.34■□□□□ 0.05
RNF4P78317 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.34■□□□□ 0.05
RNF4P78317 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 GGT4P-201ENST00000623672 1708 ntBASIC15.34■□□□□ 0.05
RNF4P78317 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.34■□□□□ 0.05
RNF4P78317 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.34■□□□□ 0.05
RNF4P78317 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.34■□□□□ 0.05
RNF4P78317 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.05
RNF4P78317 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
RNF4P78317 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
RNF4P78317 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.05
RNF4P78317 UBALD1-205ENST00000590891 2641 ntBASIC15.33■□□□□ 0.05
RNF4P78317 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.33■□□□□ 0.05
RNF4P78317 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.33■□□□□ 0.05
RNF4P78317 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
RNF4P78317 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.05
RNF4P78317 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
RNF4P78317 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
RNF4P78317 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNF4P78317 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNF4P78317 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.33■□□□□ 0.04
RNF4P78317 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.33■□□□□ 0.04
RNF4P78317 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNF4P78317 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNF4P78317 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNF4P78317 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.33■□□□□ 0.04
RNF4P78317 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNF4P78317 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
RNF4P78317 AC005237.2-201ENST00000434368 219 ntBASIC15.33■□□□□ 0.04
RNF4P78317 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RNF4P78317 KRT8P23-201ENST00000560090 1207 ntBASIC15.33■□□□□ 0.04
RNF4P78317 LINC01225-203ENST00000563550 1244 ntBASIC15.33■□□□□ 0.04
RNF4P78317 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNF4P78317 AC027307.2-201ENST00000591252 911 ntBASIC15.33■□□□□ 0.04
RNF4P78317 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RNF4P78317 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.33■□□□□ 0.04
RNF4P78317 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNF4P78317 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
RNF4P78317 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RNF4P78317 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
RNF4P78317 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
RNF4P78317 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
RNF4P78317 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNF4P78317 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
RNF4P78317 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNF4P78317 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
RNF4P78317 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNF4P78317 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RNF4P78317 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
RNF4P78317 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
RNF4P78317 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC15.32■□□□□ 0.04
RNF4P78317 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.32■□□□□ 0.04
RNF4P78317 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNF4P78317 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNF4P78317 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNF4P78317 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNF4P78317 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.32■□□□□ 0.04
RNF4P78317 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.32■□□□□ 0.04
RNF4P78317 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
RNF4P78317 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RNF4P78317 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNF4P78317 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
RNF4P78317 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNF4P78317 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RNF4P78317 FLJ38576-201ENST00000623820 2459 ntBASIC15.32■□□□□ 0.04
RNF4P78317 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNF4P78317 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNF4P78317 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.32■□□□□ 0.04
RNF4P78317 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNF4P78317 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNF4P78317 AL627223.1-201ENST00000416693 442 ntBASIC15.32■□□□□ 0.04
RNF4P78317 AC092183.1-201ENST00000469884 875 ntBASIC15.32■□□□□ 0.04
RNF4P78317 AC069335.1-201ENST00000489972 472 ntBASIC15.32■□□□□ 0.04
RNF4P78317 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms