Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-1P43699 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-1P43699 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-1P43699 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 HARS-203ENST00000431330 1774 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX2-1P43699 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX2-1P43699 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC13.63□□□□□ -0.23
NKX2-1P43699 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX2-1P43699 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC13.63□□□□□ -0.23
NKX2-1P43699 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
NKX2-1P43699 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC13.63□□□□□ -0.23
NKX2-1P43699 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
NKX2-1P43699 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
NKX2-1P43699 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
NKX2-1P43699 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC13.63□□□□□ -0.23
NKX2-1P43699 BX664615.1-201ENST00000443558 458 ntBASIC13.63□□□□□ -0.23
NKX2-1P43699 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC13.63□□□□□ -0.23
NKX2-1P43699 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC13.63□□□□□ -0.23
NKX2-1P43699 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC13.63□□□□□ -0.23
NKX2-1P43699 SNX5-210ENST00000481323 562 ntTSL 3 BASIC13.63□□□□□ -0.23
NKX2-1P43699 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX2-1P43699 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX2-1P43699 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC13.63□□□□□ -0.23
NKX2-1P43699 P4HB-223ENST00000576390 439 ntTSL 4 BASIC13.63□□□□□ -0.23
NKX2-1P43699 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC13.63□□□□□ -0.23
NKX2-1P43699 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 LINC01023-201ENST00000606054 436 ntBASIC13.63□□□□□ -0.23
NKX2-1P43699 AC073592.5-201ENST00000624854 528 ntBASIC13.63□□□□□ -0.23
NKX2-1P43699 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC13.63□□□□□ -0.23
NKX2-1P43699 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX2-1P43699 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX2-1P43699 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX2-1P43699 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC13.63□□□□□ -0.23
NKX2-1P43699 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX2-1P43699 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX2-1P43699 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
NKX2-1P43699 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-1P43699 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
NKX2-1P43699 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC13.62□□□□□ -0.23
NKX2-1P43699 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC13.62□□□□□ -0.23
NKX2-1P43699 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
NKX2-1P43699 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 AC097637.2-201ENST00000624096 1997 ntBASIC13.62□□□□□ -0.23
NKX2-1P43699 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC13.62□□□□□ -0.23
NKX2-1P43699 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC13.62□□□□□ -0.23
NKX2-1P43699 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC13.62□□□□□ -0.23
NKX2-1P43699 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC13.62□□□□□ -0.23
NKX2-1P43699 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC13.62□□□□□ -0.23
NKX2-1P43699 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC13.62□□□□□ -0.23
NKX2-1P43699 AC010203.1-204ENST00000548782 407 ntBASIC13.62□□□□□ -0.23
NKX2-1P43699 AC005336.2-201ENST00000593183 939 ntBASIC13.62□□□□□ -0.23
NKX2-1P43699 AL353801.3-201ENST00000609898 542 ntBASIC13.62□□□□□ -0.23
NKX2-1P43699 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC13.62□□□□□ -0.23
NKX2-1P43699 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC13.62□□□□□ -0.23
NKX2-1P43699 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 PRAL-201ENST00000624952 3286 ntBASIC13.62□□□□□ -0.23
NKX2-1P43699 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 MYO15B-237ENST00000642007 4893 ntBASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms