Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.8■□□□□ 0.28
RPA3P35244 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.8■□□□□ 0.28
RPA3P35244 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.8■□□□□ 0.28
RPA3P35244 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.8■□□□□ 0.28
RPA3P35244 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 SART3-203ENST00000546611 1184 ntBASIC16.8■□□□□ 0.28
RPA3P35244 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.8■□□□□ 0.28
RPA3P35244 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.8■□□□□ 0.28
RPA3P35244 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.8■□□□□ 0.28
RPA3P35244 AL121912.1-201ENST00000603683 238 ntBASIC16.8■□□□□ 0.28
RPA3P35244 AL022326.1-202ENST00000641533 845 ntBASIC16.8■□□□□ 0.28
RPA3P35244 AL139011.1-202ENST00000642063 584 ntBASIC16.8■□□□□ 0.28
RPA3P35244 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
RPA3P35244 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
RPA3P35244 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
RPA3P35244 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.79■□□□□ 0.28
RPA3P35244 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
RPA3P35244 GGT4P-201ENST00000623672 1708 ntBASIC16.79■□□□□ 0.28
RPA3P35244 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.79■□□□□ 0.28
RPA3P35244 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
RPA3P35244 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
RPA3P35244 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.79■□□□□ 0.28
RPA3P35244 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
RPA3P35244 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.79■□□□□ 0.28
RPA3P35244 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.79■□□□□ 0.28
RPA3P35244 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.79■□□□□ 0.28
RPA3P35244 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.79■□□□□ 0.28
RPA3P35244 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.79■□□□□ 0.28
RPA3P35244 AC013467.2-201ENST00000605472 835 ntBASIC16.79■□□□□ 0.28
RPA3P35244 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
RPA3P35244 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.79■□□□□ 0.28
RPA3P35244 AC004817.3-201ENST00000602957 2129 ntBASIC16.79■□□□□ 0.28
RPA3P35244 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
RPA3P35244 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.79■□□□□ 0.28
RPA3P35244 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RPA3P35244 AL671710.1-201ENST00000610245 2349 ntBASIC16.79■□□□□ 0.28
RPA3P35244 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
RPA3P35244 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RPA3P35244 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RPA3P35244 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RPA3P35244 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.78■□□□□ 0.28
RPA3P35244 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RPA3P35244 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
RPA3P35244 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RPA3P35244 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
RPA3P35244 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RPA3P35244 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RPA3P35244 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RPA3P35244 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RPA3P35244 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.78■□□□□ 0.28
RPA3P35244 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.78■□□□□ 0.28
RPA3P35244 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RPA3P35244 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RPA3P35244 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RPA3P35244 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RPA3P35244 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RPA3P35244 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.78■□□□□ 0.28
RPA3P35244 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.78■□□□□ 0.28
RPA3P35244 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.78■□□□□ 0.28
RPA3P35244 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RPA3P35244 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
RPA3P35244 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.78■□□□□ 0.28
RPA3P35244 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RPA3P35244 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
RPA3P35244 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms