Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHMT2P34897 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.25■□□□□ 0.19
SHMT2P34897 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SHMT2P34897 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
SHMT2P34897 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHMT2P34897 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.24■□□□□ 0.19
SHMT2P34897 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHMT2P34897 AC007950.2-201ENST00000615045 2347 ntBASIC16.24■□□□□ 0.19
SHMT2P34897 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHMT2P34897 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.24■□□□□ 0.19
SHMT2P34897 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SHMT2P34897 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHMT2P34897 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
SHMT2P34897 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.24■□□□□ 0.19
SHMT2P34897 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHMT2P34897 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHMT2P34897 RNU1-129P-201ENST00000384064 167 ntBASIC16.24■□□□□ 0.19
SHMT2P34897 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SHMT2P34897 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SHMT2P34897 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SHMT2P34897 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.24■□□□□ 0.19
SHMT2P34897 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.24■□□□□ 0.19
SHMT2P34897 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.24■□□□□ 0.19
SHMT2P34897 MIR3909-201ENST00000579518 119 ntBASIC16.24■□□□□ 0.19
SHMT2P34897 U1.21-201ENST00000580816 167 ntBASIC16.24■□□□□ 0.19
SHMT2P34897 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SHMT2P34897 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.24■□□□□ 0.19
SHMT2P34897 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.24■□□□□ 0.19
SHMT2P34897 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.24■□□□□ 0.19
SHMT2P34897 AL031055.1-201ENST00000606362 631 ntBASIC16.24■□□□□ 0.19
SHMT2P34897 AL078644.1-201ENST00000609881 752 ntBASIC16.24■□□□□ 0.19
SHMT2P34897 AC091812.2-201ENST00000619081 385 ntBASIC16.24■□□□□ 0.19
SHMT2P34897 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.24■□□□□ 0.19
SHMT2P34897 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHMT2P34897 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
SHMT2P34897 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
SHMT2P34897 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.24■□□□□ 0.19
SHMT2P34897 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHMT2P34897 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.24■□□□□ 0.19
SHMT2P34897 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
SHMT2P34897 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHMT2P34897 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.24■□□□□ 0.19
SHMT2P34897 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
SHMT2P34897 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHMT2P34897 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.23■□□□□ 0.19
SHMT2P34897 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.23■□□□□ 0.19
SHMT2P34897 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.23■□□□□ 0.19
SHMT2P34897 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.23■□□□□ 0.19
SHMT2P34897 AC092919.2-201ENST00000623631 1645 ntBASIC16.23■□□□□ 0.19
SHMT2P34897 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
SHMT2P34897 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHMT2P34897 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
SHMT2P34897 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHMT2P34897 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHMT2P34897 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHMT2P34897 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.23■□□□□ 0.19
SHMT2P34897 AL391256.1-201ENST00000443260 1855 ntBASIC16.23■□□□□ 0.19
SHMT2P34897 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHMT2P34897 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SHMT2P34897 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHMT2P34897 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHMT2P34897 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.23■□□□□ 0.19
SHMT2P34897 PMS2P4-201ENST00000412466 1052 ntBASIC16.23■□□□□ 0.19
SHMT2P34897 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.23■□□□□ 0.19
SHMT2P34897 HTR5BP-201ENST00000430851 1154 ntBASIC16.23■□□□□ 0.19
SHMT2P34897 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.23■□□□□ 0.19
SHMT2P34897 ACTG1P14-201ENST00000446382 1122 ntBASIC16.23■□□□□ 0.19
SHMT2P34897 AC112482.1-201ENST00000492080 688 ntBASIC16.23■□□□□ 0.19
SHMT2P34897 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
SHMT2P34897 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.23■□□□□ 0.19
SHMT2P34897 AC109635.5-201ENST00000533593 962 ntBASIC16.23■□□□□ 0.19
SHMT2P34897 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.23■□□□□ 0.19
SHMT2P34897 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHMT2P34897 AC078925.2-201ENST00000624013 1973 ntBASIC16.23■□□□□ 0.19
SHMT2P34897 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
SHMT2P34897 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHMT2P34897 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
SHMT2P34897 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHMT2P34897 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
SHMT2P34897 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
SHMT2P34897 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHMT2P34897 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SHMT2P34897 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.23■□□□□ 0.19
SHMT2P34897 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHMT2P34897 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SHMT2P34897 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHMT2P34897 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.23■□□□□ 0.19
SHMT2P34897 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
SHMT2P34897 AL513477.1-201ENST00000602865 2407 ntBASIC16.23■□□□□ 0.19
SHMT2P34897 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SHMT2P34897 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHMT2P34897 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
SHMT2P34897 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SHMT2P34897 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.22■□□□□ 0.19
SHMT2P34897 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SHMT2P34897 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.22■□□□□ 0.19
SHMT2P34897 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SHMT2P34897 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms