Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
COL6A2P12110 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
COL6A2P12110 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.41■□□□□ 0.22
COL6A2P12110 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A2P12110 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.41■□□□□ 0.22
COL6A2P12110 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.22
COL6A2P12110 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.41■□□□□ 0.22
COL6A2P12110 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
COL6A2P12110 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.41■□□□□ 0.22
COL6A2P12110 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A2P12110 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
COL6A2P12110 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A2P12110 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A2P12110 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A2P12110 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A2P12110 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A2P12110 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A2P12110 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A2P12110 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A2P12110 C1R-202ENST00000536053 2347 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A2P12110 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
COL6A2P12110 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
COL6A2P12110 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
COL6A2P12110 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A2P12110 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A2P12110 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.4■□□□□ 0.22
COL6A2P12110 SAPCD2P3-201ENST00000455031 850 ntBASIC16.4■□□□□ 0.22
COL6A2P12110 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.4■□□□□ 0.22
COL6A2P12110 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.4■□□□□ 0.22
COL6A2P12110 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.4■□□□□ 0.22
COL6A2P12110 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A2P12110 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.4■□□□□ 0.22
COL6A2P12110 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL6A2P12110 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.4■□□□□ 0.22
COL6A2P12110 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.4■□□□□ 0.22
COL6A2P12110 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.4■□□□□ 0.22
COL6A2P12110 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.4■□□□□ 0.22
COL6A2P12110 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.4■□□□□ 0.22
COL6A2P12110 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A2P12110 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A2P12110 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
COL6A2P12110 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.4■□□□□ 0.22
COL6A2P12110 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A2P12110 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A2P12110 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
COL6A2P12110 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A2P12110 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A2P12110 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A2P12110 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A2P12110 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A2P12110 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.4■□□□□ 0.22
COL6A2P12110 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A2P12110 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.4■□□□□ 0.22
COL6A2P12110 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.4■□□□□ 0.22
COL6A2P12110 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.4■□□□□ 0.22
COL6A2P12110 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A2P12110 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL6A2P12110 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.22
COL6A2P12110 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
COL6A2P12110 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
COL6A2P12110 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.39■□□□□ 0.21
COL6A2P12110 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A2P12110 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A2P12110 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A2P12110 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A2P12110 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A2P12110 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
COL6A2P12110 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A2P12110 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.39■□□□□ 0.21
COL6A2P12110 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
COL6A2P12110 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
COL6A2P12110 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.39■□□□□ 0.21
COL6A2P12110 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A2P12110 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.39■□□□□ 0.21
COL6A2P12110 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A2P12110 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.39■□□□□ 0.21
COL6A2P12110 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.39■□□□□ 0.21
COL6A2P12110 LINC01711-201ENST00000598340 967 ntBASIC16.39■□□□□ 0.21
COL6A2P12110 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A2P12110 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
COL6A2P12110 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A2P12110 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.39■□□□□ 0.21
COL6A2P12110 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
COL6A2P12110 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.39■□□□□ 0.21
COL6A2P12110 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A2P12110 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A2P12110 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.39■□□□□ 0.21
COL6A2P12110 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A2P12110 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
COL6A2P12110 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.39■□□□□ 0.21
COL6A2P12110 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.39■□□□□ 0.21
COL6A2P12110 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A2P12110 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A2P12110 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A2P12110 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A2P12110 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A2P12110 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A2P12110 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
COL6A2P12110 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.38■□□□□ 0.21
COL6A2P12110 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms