Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
HMGB1P09429 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC19.53■□□□□ 0.72
HMGB1P09429 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
HMGB1P09429 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.53■□□□□ 0.72
HMGB1P09429 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB1P09429 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB1P09429 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC19.52■□□□□ 0.72
HMGB1P09429 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB1P09429 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB1P09429 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB1P09429 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB1P09429 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
HMGB1P09429 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB1P09429 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB1P09429 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB1P09429 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
HMGB1P09429 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB1P09429 AC005622.1-201ENST00000636801 1703 ntBASIC19.52■□□□□ 0.72
HMGB1P09429 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
HMGB1P09429 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
HMGB1P09429 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
HMGB1P09429 KRT18P34-201ENST00000488218 1270 ntBASIC19.52■□□□□ 0.72
HMGB1P09429 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.52■□□□□ 0.72
HMGB1P09429 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.52■□□□□ 0.72
HMGB1P09429 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
HMGB1P09429 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC19.52■□□□□ 0.72
HMGB1P09429 AC068137.2-201ENST00000605408 478 ntBASIC19.52■□□□□ 0.72
HMGB1P09429 AL161645.1-201ENST00000622716 1255 ntBASIC19.52■□□□□ 0.72
HMGB1P09429 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB1P09429 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC19.52■□□□□ 0.72
HMGB1P09429 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB1P09429 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
HMGB1P09429 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB1P09429 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB1P09429 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB1P09429 TNRC18P3-201ENST00000441896 2691 ntBASIC19.52■□□□□ 0.72
HMGB1P09429 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB1P09429 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB1P09429 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC19.52■□□□□ 0.71
HMGB1P09429 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
HMGB1P09429 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HMGB1P09429 REXO1L8P-201ENST00000604378 1897 ntBASIC19.52■□□□□ 0.71
HMGB1P09429 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
HMGB1P09429 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC19.52■□□□□ 0.71
HMGB1P09429 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC19.51■□□□□ 0.71
HMGB1P09429 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
HMGB1P09429 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGB1P09429 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC19.51■□□□□ 0.71
HMGB1P09429 PCDH8P1-201ENST00000428983 2773 ntBASIC19.51■□□□□ 0.71
HMGB1P09429 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGB1P09429 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC19.51■□□□□ 0.71
HMGB1P09429 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HMGB1P09429 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGB1P09429 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGB1P09429 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGB1P09429 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
HMGB1P09429 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
HMGB1P09429 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HMGB1P09429 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC19.51■□□□□ 0.71
HMGB1P09429 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.51■□□□□ 0.71
HMGB1P09429 U82695.1-201ENST00000635752 1889 ntBASIC19.51■□□□□ 0.71
HMGB1P09429 AL596087.1-201ENST00000400979 1969 ntBASIC19.51■□□□□ 0.71
HMGB1P09429 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGB1P09429 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
HMGB1P09429 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGB1P09429 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HMGB1P09429 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
HMGB1P09429 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGB1P09429 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
HMGB1P09429 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGB1P09429 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGB1P09429 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGB1P09429 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
HMGB1P09429 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC19.51■□□□□ 0.71
HMGB1P09429 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC19.51■□□□□ 0.71
HMGB1P09429 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HMGB1P09429 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGB1P09429 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGB1P09429 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC19.5■□□□□ 0.71
HMGB1P09429 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
HMGB1P09429 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGB1P09429 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGB1P09429 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC19.5■□□□□ 0.71
HMGB1P09429 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
HMGB1P09429 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGB1P09429 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
HMGB1P09429 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.5■□□□□ 0.71
HMGB1P09429 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC19.5■□□□□ 0.71
HMGB1P09429 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.5■□□□□ 0.71
HMGB1P09429 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.5■□□□□ 0.71
HMGB1P09429 AL078644.1-201ENST00000609881 752 ntBASIC19.5■□□□□ 0.71
HMGB1P09429 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC19.5■□□□□ 0.71
HMGB1P09429 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC19.5■□□□□ 0.71
HMGB1P09429 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGB1P09429 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19.5■□□□□ 0.71
HMGB1P09429 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC19.5■□□□□ 0.71
HMGB1P09429 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms