Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC12.9□□□□□ -0.34
CXCL1P09341 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC12.9□□□□□ -0.34
CXCL1P09341 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
CXCL1P09341 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC12.9□□□□□ -0.34
CXCL1P09341 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC12.9□□□□□ -0.34
CXCL1P09341 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC12.9□□□□□ -0.34
CXCL1P09341 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC12.9□□□□□ -0.34
CXCL1P09341 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC12.9□□□□□ -0.34
CXCL1P09341 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC12.9□□□□□ -0.34
CXCL1P09341 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC12.9□□□□□ -0.34
CXCL1P09341 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC12.9□□□□□ -0.34
CXCL1P09341 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC12.9□□□□□ -0.34
CXCL1P09341 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC12.9□□□□□ -0.34
CXCL1P09341 AL359183.1-201ENST00000623796 2132 ntBASIC12.9□□□□□ -0.34
CXCL1P09341 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC12.9□□□□□ -0.34
CXCL1P09341 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
CXCL1P09341 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC12.9□□□□□ -0.34
CXCL1P09341 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC12.9□□□□□ -0.34
CXCL1P09341 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC12.9□□□□□ -0.34
CXCL1P09341 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
CXCL1P09341 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC12.9□□□□□ -0.34
CXCL1P09341 CDC14C-201ENST00000428251 1719 ntBASIC12.9□□□□□ -0.34
CXCL1P09341 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC12.9□□□□□ -0.34
CXCL1P09341 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC12.9□□□□□ -0.34
CXCL1P09341 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC12.9□□□□□ -0.34
CXCL1P09341 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
CXCL1P09341 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.35
CXCL1P09341 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
CXCL1P09341 AC006449.6-201ENST00000612330 2296 ntBASIC12.9□□□□□ -0.35
CXCL1P09341 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
CXCL1P09341 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
CXCL1P09341 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC12.89□□□□□ -0.35
CXCL1P09341 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
CXCL1P09341 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
CXCL1P09341 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
CXCL1P09341 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
CXCL1P09341 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC12.89□□□□□ -0.35
CXCL1P09341 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC12.89□□□□□ -0.35
CXCL1P09341 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC12.89□□□□□ -0.35
CXCL1P09341 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC12.89□□□□□ -0.35
CXCL1P09341 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC12.89□□□□□ -0.35
CXCL1P09341 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
CXCL1P09341 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 POR-201ENST00000394893 2532 ntTSL 5 BASIC12.89□□□□□ -0.35
CXCL1P09341 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
CXCL1P09341 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 MYCLP1-201ENST00000372451 1075 ntBASIC12.89□□□□□ -0.35
CXCL1P09341 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC12.89□□□□□ -0.35
CXCL1P09341 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
CXCL1P09341 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC12.89□□□□□ -0.35
CXCL1P09341 AC112698.1-201ENST00000510299 916 ntBASIC12.89□□□□□ -0.35
CXCL1P09341 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC12.89□□□□□ -0.35
CXCL1P09341 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC12.89□□□□□ -0.35
CXCL1P09341 NT5C-210ENST00000582160 860 ntTSL 2 BASIC12.89□□□□□ -0.35
CXCL1P09341 MIR4651-201ENST00000582622 73 ntBASIC12.89□□□□□ -0.35
CXCL1P09341 TK1-205ENST00000590862 642 ntTSL 3 BASIC12.89□□□□□ -0.35
CXCL1P09341 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
CXCL1P09341 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC12.89□□□□□ -0.35
CXCL1P09341 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC12.89□□□□□ -0.35
CXCL1P09341 AMT-250ENST00000637682 1823 ntTSL 5 BASIC12.89□□□□□ -0.35
CXCL1P09341 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC12.89□□□□□ -0.35
CXCL1P09341 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC12.89□□□□□ -0.35
CXCL1P09341 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 LINC02447-202ENST00000501888 2146 ntBASIC12.89□□□□□ -0.35
CXCL1P09341 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
CXCL1P09341 EGFEM1P-202ENST00000431685 1563 ntBASIC12.89□□□□□ -0.35
CXCL1P09341 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC12.89□□□□□ -0.35
CXCL1P09341 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC12.89□□□□□ -0.35
CXCL1P09341 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
CXCL1P09341 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
CXCL1P09341 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms