Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
LDB3O75112 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
LDB3O75112 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC15.58■□□□□ 0.08
LDB3O75112 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
LDB3O75112 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
LDB3O75112 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
LDB3O75112 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 RPSAP43-201ENST00000402237 625 ntBASIC15.58■□□□□ 0.08
LDB3O75112 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.58■□□□□ 0.08
LDB3O75112 GPX1P2-201ENST00000429271 606 ntBASIC15.58■□□□□ 0.08
LDB3O75112 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.58■□□□□ 0.08
LDB3O75112 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC15.58■□□□□ 0.08
LDB3O75112 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.58■□□□□ 0.08
LDB3O75112 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.58■□□□□ 0.08
LDB3O75112 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.58■□□□□ 0.08
LDB3O75112 AC005829.1-201ENST00000570002 483 ntBASIC15.58■□□□□ 0.08
LDB3O75112 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
LDB3O75112 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.58■□□□□ 0.08
LDB3O75112 MIR3687-2-201ENST00000577708 61 ntBASIC15.58■□□□□ 0.08
LDB3O75112 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.58■□□□□ 0.08
LDB3O75112 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 MIR3687-1-201ENST00000614492 61 ntBASIC15.58■□□□□ 0.08
LDB3O75112 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 PCGF3-213ENST00000620529 1899 ntBASIC15.58■□□□□ 0.08
LDB3O75112 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.58■□□□□ 0.08
LDB3O75112 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.58■□□□□ 0.08
LDB3O75112 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
LDB3O75112 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
LDB3O75112 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.08
LDB3O75112 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
LDB3O75112 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.58■□□□□ 0.08
LDB3O75112 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LDB3O75112 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.58■□□□□ 0.08
LDB3O75112 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
LDB3O75112 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.57■□□□□ 0.08
LDB3O75112 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC15.57■□□□□ 0.08
LDB3O75112 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
LDB3O75112 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.57■□□□□ 0.08
LDB3O75112 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
LDB3O75112 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.57■□□□□ 0.08
LDB3O75112 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.57■□□□□ 0.08
LDB3O75112 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
LDB3O75112 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.57■□□□□ 0.08
LDB3O75112 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
LDB3O75112 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.57■□□□□ 0.08
LDB3O75112 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.57■□□□□ 0.08
LDB3O75112 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 UPF3AP3-201ENST00000420996 769 ntBASIC15.57■□□□□ 0.08
LDB3O75112 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.57■□□□□ 0.08
LDB3O75112 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.57■□□□□ 0.08
LDB3O75112 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
LDB3O75112 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.57■□□□□ 0.08
LDB3O75112 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.57■□□□□ 0.08
LDB3O75112 AL118508.1-201ENST00000613502 2345 ntBASIC15.57■□□□□ 0.08
LDB3O75112 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
LDB3O75112 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
LDB3O75112 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.57■□□□□ 0.08
LDB3O75112 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.57■□□□□ 0.08
LDB3O75112 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LDB3O75112 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
LDB3O75112 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms