Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SSSCA1O60232 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SSSCA1O60232 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SSSCA1O60232 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
SSSCA1O60232 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SSSCA1O60232 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SSSCA1O60232 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
SSSCA1O60232 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC13.58□□□□□ -0.24
SSSCA1O60232 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
SSSCA1O60232 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
SSSCA1O60232 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
SSSCA1O60232 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
SSSCA1O60232 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SSSCA1O60232 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SSSCA1O60232 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SSSCA1O60232 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SSSCA1O60232 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC13.58□□□□□ -0.24
SSSCA1O60232 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC13.58□□□□□ -0.24
SSSCA1O60232 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC13.58□□□□□ -0.24
SSSCA1O60232 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC13.58□□□□□ -0.24
SSSCA1O60232 AL139011.1-202ENST00000642063 584 ntBASIC13.58□□□□□ -0.24
SSSCA1O60232 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC13.58□□□□□ -0.24
SSSCA1O60232 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SSSCA1O60232 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
SSSCA1O60232 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC13.58□□□□□ -0.24
SSSCA1O60232 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC13.58□□□□□ -0.24
SSSCA1O60232 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
SSSCA1O60232 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.58□□□□□ -0.24
SSSCA1O60232 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SSSCA1O60232 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SSSCA1O60232 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC13.58□□□□□ -0.24
SSSCA1O60232 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC13.58□□□□□ -0.24
SSSCA1O60232 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SSSCA1O60232 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
SSSCA1O60232 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC13.58□□□□□ -0.24
SSSCA1O60232 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SSSCA1O60232 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SSSCA1O60232 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SSSCA1O60232 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SSSCA1O60232 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SSSCA1O60232 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SSSCA1O60232 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC13.58□□□□□ -0.24
SSSCA1O60232 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC13.58□□□□□ -0.24
SSSCA1O60232 AC013268.4-201ENST00000637413 2228 ntBASIC13.58□□□□□ -0.24
SSSCA1O60232 PCDHA3-202ENST00000532566 4594 ntBASIC13.57□□□□□ -0.24
SSSCA1O60232 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
SSSCA1O60232 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC13.57□□□□□ -0.24
SSSCA1O60232 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SSSCA1O60232 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC13.57□□□□□ -0.24
SSSCA1O60232 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC13.57□□□□□ -0.24
SSSCA1O60232 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SSSCA1O60232 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SSSCA1O60232 LINC02228-204ENST00000642115 2962 ntBASIC13.57□□□□□ -0.24
SSSCA1O60232 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SSSCA1O60232 AL671710.1-201ENST00000610245 2349 ntBASIC13.57□□□□□ -0.24
SSSCA1O60232 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
SSSCA1O60232 HNRNPRP1-201ENST00000453465 1695 ntBASIC13.57□□□□□ -0.24
SSSCA1O60232 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC13.57□□□□□ -0.24
SSSCA1O60232 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
SSSCA1O60232 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SSSCA1O60232 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
SSSCA1O60232 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC13.57□□□□□ -0.24
SSSCA1O60232 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC13.57□□□□□ -0.24
SSSCA1O60232 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC13.57□□□□□ -0.24
SSSCA1O60232 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC13.57□□□□□ -0.24
SSSCA1O60232 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SSSCA1O60232 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SSSCA1O60232 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SSSCA1O60232 MEG3-211ENST00000452514 461 ntTSL 3 BASIC13.57□□□□□ -0.24
SSSCA1O60232 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC13.57□□□□□ -0.24
SSSCA1O60232 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
SSSCA1O60232 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC13.57□□□□□ -0.24
SSSCA1O60232 AL592071.1-201ENST00000611956 408 ntBASIC13.57□□□□□ -0.24
SSSCA1O60232 AC124864.1-201ENST00000623408 392 ntBASIC13.57□□□□□ -0.24
SSSCA1O60232 WDR6-223ENST00000627177 207 ntTSL 2 BASIC13.57□□□□□ -0.24
SSSCA1O60232 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
SSSCA1O60232 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SSSCA1O60232 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SSSCA1O60232 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SSSCA1O60232 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
SSSCA1O60232 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SSSCA1O60232 HARS-203ENST00000431330 1774 ntTSL 2 BASIC13.57□□□□□ -0.24
SSSCA1O60232 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC13.57□□□□□ -0.24
SSSCA1O60232 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
SSSCA1O60232 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.57□□□□□ -0.24
SSSCA1O60232 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC13.57□□□□□ -0.24
SSSCA1O60232 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SSSCA1O60232 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC13.57□□□□□ -0.24
SSSCA1O60232 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
SSSCA1O60232 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SSSCA1O60232 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SSSCA1O60232 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SSSCA1O60232 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
SSSCA1O60232 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SSSCA1O60232 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC13.56□□□□□ -0.24
SSSCA1O60232 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SSSCA1O60232 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC13.56□□□□□ -0.24
SSSCA1O60232 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SSSCA1O60232 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SSSCA1O60232 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms