Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.62■□□□□ 0.57
CHMP2AO43633 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP2AO43633 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP2AO43633 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.62■□□□□ 0.57
CHMP2AO43633 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CHMP2AO43633 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP2AO43633 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP2AO43633 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP2AO43633 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CHMP2AO43633 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP2AO43633 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP2AO43633 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.61■□□□□ 0.57
CHMP2AO43633 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC18.61■□□□□ 0.57
CHMP2AO43633 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP2AO43633 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP2AO43633 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
CHMP2AO43633 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP2AO43633 TSEN15P1-201ENST00000423257 515 ntBASIC18.61■□□□□ 0.57
CHMP2AO43633 FAM58DP-201ENST00000428076 619 ntBASIC18.61■□□□□ 0.57
CHMP2AO43633 HLA-J-202ENST00000469281 1241 ntBASIC18.61■□□□□ 0.57
CHMP2AO43633 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC18.61■□□□□ 0.57
CHMP2AO43633 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
CHMP2AO43633 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP2AO43633 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP2AO43633 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP2AO43633 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP2AO43633 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP2AO43633 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP2AO43633 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP2AO43633 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP2AO43633 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP2AO43633 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP2AO43633 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP2AO43633 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CHMP2AO43633 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CHMP2AO43633 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP2AO43633 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP2AO43633 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC18.6■□□□□ 0.57
CHMP2AO43633 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP2AO43633 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP2AO43633 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP2AO43633 AL139400.1-201ENST00000366220 510 ntBASIC18.6■□□□□ 0.57
CHMP2AO43633 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC18.6■□□□□ 0.57
CHMP2AO43633 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP2AO43633 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.6■□□□□ 0.57
CHMP2AO43633 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP2AO43633 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18.6■□□□□ 0.57
CHMP2AO43633 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.6■□□□□ 0.57
CHMP2AO43633 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC18.6■□□□□ 0.57
CHMP2AO43633 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP2AO43633 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP2AO43633 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.6■□□□□ 0.57
CHMP2AO43633 LINC01225-203ENST00000563550 1244 ntBASIC18.6■□□□□ 0.57
CHMP2AO43633 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP2AO43633 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC18.6■□□□□ 0.57
CHMP2AO43633 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CHMP2AO43633 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
CHMP2AO43633 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CHMP2AO43633 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CHMP2AO43633 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP2AO43633 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP2AO43633 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP2AO43633 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP2AO43633 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP2AO43633 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP2AO43633 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP2AO43633 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP2AO43633 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP2AO43633 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP2AO43633 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP2AO43633 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP2AO43633 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP2AO43633 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP2AO43633 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP2AO43633 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP2AO43633 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CHMP2AO43633 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP2AO43633 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP2AO43633 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP2AO43633 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC18.59■□□□□ 0.57
CHMP2AO43633 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP2AO43633 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.59■□□□□ 0.57
CHMP2AO43633 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP2AO43633 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC18.59■□□□□ 0.57
CHMP2AO43633 CBR1-202ENST00000399191 838 ntTSL 3 BASIC18.59■□□□□ 0.57
CHMP2AO43633 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.59■□□□□ 0.57
CHMP2AO43633 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.59■□□□□ 0.57
CHMP2AO43633 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.59■□□□□ 0.57
CHMP2AO43633 SLC25A39P2-201ENST00000537614 270 ntBASIC18.59■□□□□ 0.57
CHMP2AO43633 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC18.59■□□□□ 0.57
CHMP2AO43633 AC093028.1-201ENST00000622998 982 ntBASIC18.59■□□□□ 0.57
CHMP2AO43633 AC008267.7-201ENST00000624570 1194 ntBASIC18.59■□□□□ 0.57
CHMP2AO43633 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
CHMP2AO43633 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP2AO43633 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP2AO43633 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP2AO43633 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CHMP2AO43633 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP2AO43633 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CHMP2AO43633 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms