Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP1O15259 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC20.82■□□□□ 0.92
NPHP1O15259 RNA5SP410-201ENST00000516285 106 ntBASIC20.82■□□□□ 0.92
NPHP1O15259 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC20.82■□□□□ 0.92
NPHP1O15259 NOP2-220ENST00000545915 630 ntTSL 2 BASIC20.82■□□□□ 0.92
NPHP1O15259 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC20.82■□□□□ 0.92
NPHP1O15259 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC20.82■□□□□ 0.92
NPHP1O15259 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC20.82■□□□□ 0.92
NPHP1O15259 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC20.82■□□□□ 0.92
NPHP1O15259 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP1O15259 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP1O15259 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
NPHP1O15259 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC20.82■□□□□ 0.92
NPHP1O15259 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
NPHP1O15259 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
NPHP1O15259 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
NPHP1O15259 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP1O15259 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP1O15259 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC20.81■□□□□ 0.92
NPHP1O15259 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP1O15259 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP1O15259 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC20.81■□□□□ 0.92
NPHP1O15259 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
NPHP1O15259 NOC2LP1-202ENST00000452600 2235 ntBASIC20.81■□□□□ 0.92
NPHP1O15259 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP1O15259 NOC2LP2-201ENST00000407594 1944 ntBASIC20.81■□□□□ 0.92
NPHP1O15259 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP1O15259 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP1O15259 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC20.81■□□□□ 0.92
NPHP1O15259 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC20.81■□□□□ 0.92
NPHP1O15259 ATP5G2P4-201ENST00000442175 420 ntBASIC20.81■□□□□ 0.92
NPHP1O15259 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC20.81■□□□□ 0.92
NPHP1O15259 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC20.81■□□□□ 0.92
NPHP1O15259 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP1O15259 TEX28P1-201ENST00000613479 1221 ntBASIC20.81■□□□□ 0.92
NPHP1O15259 SPTSSB-204ENST00000617024 1292 ntBASIC20.81■□□□□ 0.92
NPHP1O15259 TEX28P2-201ENST00000617764 1221 ntBASIC20.81■□□□□ 0.92
NPHP1O15259 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP1O15259 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC20.81■□□□□ 0.92
NPHP1O15259 AC020916.1-201ENST00000587762 1774 ntBASIC20.81■□□□□ 0.92
NPHP1O15259 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.81■□□□□ 0.92
NPHP1O15259 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP1O15259 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC20.81■□□□□ 0.92
NPHP1O15259 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
NPHP1O15259 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP1O15259 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC20.81■□□□□ 0.92
NPHP1O15259 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC20.81■□□□□ 0.92
NPHP1O15259 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP1O15259 CD276-203ENST00000537340 2439 ntTSL 2 BASIC20.8■□□□□ 0.92
NPHP1O15259 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP1O15259 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
NPHP1O15259 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP1O15259 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC20.8■□□□□ 0.92
NPHP1O15259 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP1O15259 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP1O15259 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.8■□□□□ 0.92
NPHP1O15259 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP1O15259 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC20.8■□□□□ 0.92
NPHP1O15259 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP1O15259 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP1O15259 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP1O15259 WDR53-204ENST00000433160 887 ntTSL 5 BASIC20.8■□□□□ 0.92
NPHP1O15259 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC20.8■□□□□ 0.92
NPHP1O15259 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC20.8■□□□□ 0.92
NPHP1O15259 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC20.8■□□□□ 0.92
NPHP1O15259 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC20.8■□□□□ 0.92
NPHP1O15259 LITAF-210ENST00000571976 548 ntTSL 2 BASIC20.8■□□□□ 0.92
NPHP1O15259 LITAF-214ENST00000574703 486 ntTSL 2 BASIC20.8■□□□□ 0.92
NPHP1O15259 MIR6752-201ENST00000618442 71 ntBASIC20.8■□□□□ 0.92
NPHP1O15259 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC20.8■□□□□ 0.92
NPHP1O15259 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP1O15259 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP1O15259 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC20.8■□□□□ 0.92
NPHP1O15259 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP1O15259 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.8■□□□□ 0.92
NPHP1O15259 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP1O15259 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP1O15259 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP1O15259 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC20.8■□□□□ 0.92
NPHP1O15259 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP1O15259 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP1O15259 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP1O15259 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
NPHP1O15259 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC20.79■□□□□ 0.92
NPHP1O15259 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP1O15259 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP1O15259 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP1O15259 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP1O15259 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
NPHP1O15259 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
NPHP1O15259 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP1O15259 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
NPHP1O15259 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC20.79■□□□□ 0.92
NPHP1O15259 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP1O15259 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP1O15259 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP1O15259 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
NPHP1O15259 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP1O15259 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
NPHP1O15259 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms